Cluster: HRGMv2_1638_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1638
- CGC Family ID: CGCFAM_01054
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1638_6 | HRGMv2_1638_6_90 | 111676 | 113187 | + | CE4 |
| TF | HRGMv2_1638_6 | HRGMv2_1638_6_91 | 113270 | 113410 | - | HTH_8 |
| TC | HRGMv2_1638_6 | HRGMv2_1638_6_92 | 113504 | 115657 | - | 3.A.23.1.1 |
Gene ID: HRGMv2_1638_6_90
Type: CAZyme
Location: 111676 - 113187 (+)
Type: CAZyme
Location: 111676 - 113187 (+)
Gene ID: HRGMv2_1638_6_91
Type: TF
Location: 113270 - 113410 (-)
Type: TF
Location: 113270 - 113410 (-)
Gene ID: HRGMv2_1638_6_92
Type: TC
Location: 113504 - 115657 (-)
Type: TC
Location: 113504 - 115657 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Slackia
Species
Slackia isoflavoniconvertens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1638_6_90 | vegetarian > vegan | 1.54556 | 0.02321 |
| HRGMv2_1638_6_92 | vegetarian > omnivore | 1.33057 | 0.02321 |