dbCAN HGM

Cluster: HRGMv2_1637_CGC4

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1637_10	HRGMv2_1637_10_36	43370	44047	-	3.A.1.24.5
TC	HRGMv2_1637_10	HRGMv2_1637_10_37	44048	44830	-	3.A.1.24.1
CAZyme	HRGMv2_1637_10	HRGMv2_1637_10_38	45013	46140	-	GT2
CAZyme	HRGMv2_1637_10	HRGMv2_1637_10_39	46146	47138	-	GT2
CAZyme	HRGMv2_1637_10	HRGMv2_1637_10_40	47141	48154	-	GT2
CAZyme	HRGMv2_1637_10	HRGMv2_1637_10_41	48248	49543	+	GT4
STP	HRGMv2_1637_10	HRGMv2_1637_10_42	49635	50918	+	Aminotran_1_2
TC	HRGMv2_1637_10	HRGMv2_1637_10_43	50918	51517	+	9.B.18.1.2
pfam	HRGMv2_1637_10	HRGMv2_1637_10_44	51595	52641	-	tRNA-synt_1b
pfam	HRGMv2_1637_10	HRGMv2_1637_10_45	53023	53661	+	LUD_dom
TC	HRGMv2_1637_10	HRGMv2_1637_10_46	54213	54875	+	2.A.115.2.10

Gene ID: HRGMv2_1637_10_36
Type: TC
Location: 43370 - 44047 (-)

Gene ID: HRGMv2_1637_10_37
Type: TC
Location: 44048 - 44830 (-)

Gene ID: HRGMv2_1637_10_38
Type: CAZyme
Location: 45013 - 46140 (-)

Gene ID: HRGMv2_1637_10_39
Type: CAZyme
Location: 46146 - 47138 (-)

Gene ID: HRGMv2_1637_10_40
Type: CAZyme
Location: 47141 - 48154 (-)

Gene ID: HRGMv2_1637_10_41
Type: CAZyme
Location: 48248 - 49543 (+)

Gene ID: HRGMv2_1637_10_42
Type: STP
Location: 49635 - 50918 (+)

Gene ID: HRGMv2_1637_10_43
Type: TC
Location: 50918 - 51517 (+)

Gene ID: HRGMv2_1637_10_44
Type: pfam
Location: 51595 - 52641 (-)

Gene ID: HRGMv2_1637_10_45
Type: pfam
Location: 53023 - 53661 (+)

Gene ID: HRGMv2_1637_10_46
Type: TC
Location: 54213 - 54875 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1637_10_43	vegan > omnivore	1.21628	0.02745
HRGMv2_1637_10_43	vegetarian > omnivore	1.45308	0.00937
HRGMv2_1637_10_45	vegan > omnivore	3.61994	0.02745
HRGMv2_1637_10_45	vegetarian > omnivore	3.40547	0.00937