Cluster: HRGMv2_1635_CGC4

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1635_20	HRGMv2_1635_20_2	1165	2124	-	2.A.7.18.1
pfam	HRGMv2_1635_20	HRGMv2_1635_20_3	2121	3059	-	Choline_kinase \| APH
TC	HRGMv2_1635_20	HRGMv2_1635_20_4	3158	4399	-	9.A.28.1.1
pfam	HRGMv2_1635_20	HRGMv2_1635_20_5	4469	6250	-	NTP_transferase \| Choline_kinase \| APH \| NTP_transf_3 \| HTH_24
pfam	HRGMv2_1635_20	HRGMv2_1635_20_6	6350	7192	-	LicD
CAZyme	HRGMv2_1635_20	HRGMv2_1635_20_7	7232	8359	-	GT4

Gene ID: HRGMv2_1635_20_2
Type: TC
Location: 1165 - 2124 (-)

Gene ID: HRGMv2_1635_20_3
Type: pfam
Location: 2121 - 3059 (-)

Gene ID: HRGMv2_1635_20_4
Type: TC
Location: 3158 - 4399 (-)

Gene ID: HRGMv2_1635_20_5
Type: pfam
Location: 4469 - 6250 (-)

Gene ID: HRGMv2_1635_20_6
Type: pfam
Location: 6350 - 7192 (-)

Gene ID: HRGMv2_1635_20_7
Type: CAZyme
Location: 7232 - 8359 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1635_20_2	vegetarian > omnivore	1.39919	0.00021
HRGMv2_1635_20_3	vegetarian > omnivore	2.65156	0.00021
HRGMv2_1635_20_3	vegetarian > vegan	1.70583	0.00093
HRGMv2_1635_20_4	vegetarian > omnivore	1.64195	0.00021
HRGMv2_1635_20_4	vegetarian > vegan	1.37418	0.00093
HRGMv2_1635_20_6	vegan > omnivore	2.70084	0.01185
HRGMv2_1635_20_6	vegetarian > omnivore	3.20421	0.00021
HRGMv2_1635_20_7	vegetarian > omnivore	1.76095	0.00021