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Cluster: HRGMv2_1634_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1634_6 HRGMv2_1634_6_12 17397 18341 - 2.A.7.18.1
NULL(UNKNOWN) HRGMv2_1634_6 HRGMv2_1634_6_13 18365 18460 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1634_6 HRGMv2_1634_6_14 18563 20134 - NTP_transferase | Choline_kinase | APH | NTP_transf_3
CAZyme HRGMv2_1634_6 HRGMv2_1634_6_15 20368 23643 - GH13_39 | GH77
CAZyme HRGMv2_1634_6 HRGMv2_1634_6_16 23647 25146 - GT5
pfam HRGMv2_1634_6 HRGMv2_1634_6_17 25158 26252 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_1634_6 HRGMv2_1634_6_18 26256 27401 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_1634_6 HRGMv2_1634_6_19 27475 29904 - GT35
CAZyme HRGMv2_1634_6 HRGMv2_1634_6_20 30041 32236 - CBM48 | GH13_9
Gene ID: HRGMv2_1634_6_12
Type: TC
Location: 17397 - 18341 (-)
Gene ID: HRGMv2_1634_6_13
Type:
Location: 18365 - 18460 (-)
Gene ID: HRGMv2_1634_6_14
Type: pfam
Location: 18563 - 20134 (-)
Gene ID: HRGMv2_1634_6_15
Type: CAZyme
Location: 20368 - 23643 (-)
Gene ID: HRGMv2_1634_6_16
Type: CAZyme
Location: 23647 - 25146 (-)
Gene ID: HRGMv2_1634_6_17
Type: pfam
Location: 25158 - 26252 (-)
Gene ID: HRGMv2_1634_6_18
Type: pfam
Location: 26256 - 27401 (-)
Gene ID: HRGMv2_1634_6_19
Type: CAZyme
Location: 27475 - 29904 (-)
Gene ID: HRGMv2_1634_6_20
Type: CAZyme
Location: 30041 - 32236 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1634_6_16 vegetarian > vegan 1.00833 0.01882

🧭 Explore Read Mapping of CGC

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