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Cluster: HRGMv2_1634_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1634_71 HRGMv2_1634_71_2 485 1645 - CE9
STP HRGMv2_1634_71 HRGMv2_1634_71_3 1729 2898 - SIS
TF HRGMv2_1634_71 HRGMv2_1634_71_4 2924 3715 - GntR
TC HRGMv2_1634_71 HRGMv2_1634_71_5 3799 4899 - 4.A.6.1.4
TC HRGMv2_1634_71 HRGMv2_1634_71_6 4889 5698 - 4.A.6.1.4
TC HRGMv2_1634_71 HRGMv2_1634_71_7 5824 6306 - 4.A.6.1.4
pfam HRGMv2_1634_71 HRGMv2_1634_71_8 6397 6681 - YajC
TC HRGMv2_1634_71 HRGMv2_1634_71_9 6681 7112 - 4.A.6.1.15
Gene ID: HRGMv2_1634_71_2
Type: CAZyme
Location: 485 - 1645 (-)
Gene ID: HRGMv2_1634_71_3
Type: STP
Location: 1729 - 2898 (-)
Gene ID: HRGMv2_1634_71_4
Type: TF
Location: 2924 - 3715 (-)
Gene ID: HRGMv2_1634_71_5
Type: TC
Location: 3799 - 4899 (-)
Gene ID: HRGMv2_1634_71_6
Type: TC
Location: 4889 - 5698 (-)
Gene ID: HRGMv2_1634_71_7
Type: TC
Location: 5824 - 6306 (-)
Gene ID: HRGMv2_1634_71_8
Type: pfam
Location: 6397 - 6681 (-)
Gene ID: HRGMv2_1634_71_9
Type: TC
Location: 6681 - 7112 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1634_71_6 vegan > omnivore 1.09800 0.00565

🧭 Explore Read Mapping of CGC

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