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Cluster: HRGMv2_1634_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1634_52 HRGMv2_1634_52_1 3 422 - 3.A.1.7.5
TC HRGMv2_1634_52 HRGMv2_1634_52_2 419 1366 - 3.A.1.7.5
TC HRGMv2_1634_52 HRGMv2_1634_52_3 1359 2261 - 3.A.1.7.5
STP HRGMv2_1634_52 HRGMv2_1634_52_4 2337 3269 - SBP_bac_1
TF HRGMv2_1634_52 HRGMv2_1634_52_5 3688 4101 + MarR
TC HRGMv2_1634_52 HRGMv2_1634_52_6 4098 5972 + 3.A.1.135.5
TC HRGMv2_1634_52 HRGMv2_1634_52_7 5965 7938 + 3.A.1.135.5
pfam HRGMv2_1634_52 HRGMv2_1634_52_8 8168 9349 + MFS_1 | MFS_1
pfam HRGMv2_1634_52 HRGMv2_1634_52_9 9579 10706 + Acetyltransf_1 | cpYpsA | Acetyltransf_3
CAZyme HRGMv2_1634_52 HRGMv2_1634_52_10 10730 12316 - GH36
Gene ID: HRGMv2_1634_52_1
Type: TC
Location: 3 - 422 (-)
Gene ID: HRGMv2_1634_52_2
Type: TC
Location: 419 - 1366 (-)
Gene ID: HRGMv2_1634_52_3
Type: TC
Location: 1359 - 2261 (-)
Gene ID: HRGMv2_1634_52_4
Type: STP
Location: 2337 - 3269 (-)
Gene ID: HRGMv2_1634_52_5
Type: TF
Location: 3688 - 4101 (+)
Gene ID: HRGMv2_1634_52_6
Type: TC
Location: 4098 - 5972 (+)
Gene ID: HRGMv2_1634_52_7
Type: TC
Location: 5965 - 7938 (+)
Gene ID: HRGMv2_1634_52_8
Type: pfam
Location: 8168 - 9349 (+)
Gene ID: HRGMv2_1634_52_9
Type: pfam
Location: 9579 - 10706 (+)
Gene ID: HRGMv2_1634_52_10
Type: CAZyme
Location: 10730 - 12316 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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