Cluster: HRGMv2_1632_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1632
- CGC Family ID: CGCFAM_03178
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1632_11 | HRGMv2_1632_11_56 | 69372 | 70232 | + | 4.A.6.1.16 |
| pfam | HRGMv2_1632_11 | HRGMv2_1632_11_57 | 70557 | 71753 | + | S1 | S1 | S1 | S1 | S1_RRP5 |
| pfam | HRGMv2_1632_11 | HRGMv2_1632_11_58 | 71949 | 72377 | + | Ferritin |
| TC | HRGMv2_1632_11 | HRGMv2_1632_11_59 | 72645 | 73649 | + | 3.A.1.3.3 |
| TC | HRGMv2_1632_11 | HRGMv2_1632_11_60 | 73729 | 74388 | + | 3.A.1.3.14 |
| TC | HRGMv2_1632_11 | HRGMv2_1632_11_61 | 74385 | 75233 | + | 3.A.1.3.9 |
| TC | HRGMv2_1632_11 | HRGMv2_1632_11_62 | 75249 | 76025 | + | 3.A.1.3.9 |
| NULL(UNKNOWN) | HRGMv2_1632_11 | HRGMv2_1632_11_63 | 76407 | 76817 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1632_11 | HRGMv2_1632_11_64 | 76889 | 77533 | + | CoaE |
| CAZyme | HRGMv2_1632_11 | HRGMv2_1632_11_65 | 77530 | 78243 | + | GH23 |
| pfam | HRGMv2_1632_11 | HRGMv2_1632_11_66 | 78346 | 80571 | + | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| TC | HRGMv2_1632_11 | HRGMv2_1632_11_67 | 80727 | 81011 | + | 4.A.5.1.6 |
Gene ID: HRGMv2_1632_11_56
Type: TC
Location: 69372 - 70232 (+)
Type: TC
Location: 69372 - 70232 (+)
Gene ID: HRGMv2_1632_11_57
Type: pfam
Location: 70557 - 71753 (+)
Type: pfam
Location: 70557 - 71753 (+)
Gene ID: HRGMv2_1632_11_58
Type: pfam
Location: 71949 - 72377 (+)
Type: pfam
Location: 71949 - 72377 (+)
Gene ID: HRGMv2_1632_11_59
Type: TC
Location: 72645 - 73649 (+)
Type: TC
Location: 72645 - 73649 (+)
Gene ID: HRGMv2_1632_11_60
Type: TC
Location: 73729 - 74388 (+)
Type: TC
Location: 73729 - 74388 (+)
Gene ID: HRGMv2_1632_11_61
Type: TC
Location: 74385 - 75233 (+)
Type: TC
Location: 74385 - 75233 (+)
Gene ID: HRGMv2_1632_11_62
Type: TC
Location: 75249 - 76025 (+)
Type: TC
Location: 75249 - 76025 (+)
Gene ID: HRGMv2_1632_11_63
Type:
Location: 76407 - 76817 (+)
Type:
Location: 76407 - 76817 (+)
Gene ID: HRGMv2_1632_11_64
Type: pfam
Location: 76889 - 77533 (+)
Type: pfam
Location: 76889 - 77533 (+)
Gene ID: HRGMv2_1632_11_65
Type: CAZyme
Location: 77530 - 78243 (+)
Type: CAZyme
Location: 77530 - 78243 (+)
Gene ID: HRGMv2_1632_11_66
Type: pfam
Location: 78346 - 80571 (+)
Type: pfam
Location: 78346 - 80571 (+)
Gene ID: HRGMv2_1632_11_67
Type: TC
Location: 80727 - 81011 (+)
Type: TC
Location: 80727 - 81011 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Tractidigestivibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.