dbCAN Logo

Cluster: HRGMv2_1632_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1632_13 HRGMv2_1632_13_271 279866 282997 - GH3
TF HRGMv2_1632_13 HRGMv2_1632_13_272 283150 283866 + LytTR
STP HRGMv2_1632_13 HRGMv2_1632_13_273 283863 285263 + HATPase_c
TC HRGMv2_1632_13 HRGMv2_1632_13_274 285553 286299 + 3.A.1.24.5
TC HRGMv2_1632_13 HRGMv2_1632_13_275 286292 286963 + 3.A.1.24.5
TC HRGMv2_1632_13 HRGMv2_1632_13_276 287038 287895 + 3.A.1.24.5
CAZyme HRGMv2_1632_13 HRGMv2_1632_13_277 287977 290928 - GH3
pfam HRGMv2_1632_13 HRGMv2_1632_13_278 291086 292105 - PGA_cap | PGA_cap
TC HRGMv2_1632_13 HRGMv2_1632_13_279 293051 293710 - 9.B.27.2.3
Gene ID: HRGMv2_1632_13_271
Type: CAZyme
Location: 279866 - 282997 (-)
Gene ID: HRGMv2_1632_13_272
Type: TF
Location: 283150 - 283866 (+)
Gene ID: HRGMv2_1632_13_273
Type: STP
Location: 283863 - 285263 (+)
Gene ID: HRGMv2_1632_13_274
Type: TC
Location: 285553 - 286299 (+)
Gene ID: HRGMv2_1632_13_275
Type: TC
Location: 286292 - 286963 (+)
Gene ID: HRGMv2_1632_13_276
Type: TC
Location: 287038 - 287895 (+)
Gene ID: HRGMv2_1632_13_277
Type: CAZyme
Location: 287977 - 290928 (-)
Gene ID: HRGMv2_1632_13_278
Type: pfam
Location: 291086 - 292105 (-)
Gene ID: HRGMv2_1632_13_279
Type: TC
Location: 293051 - 293710 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1632_13_279 vegetarian > omnivore 1.55059 0.03783

🧭 Explore Read Mapping of CGC

← Back to Cluster List