Cluster: HRGMv2_1625_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1625
- CGC Family ID: CGCFAM_00963
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1625_3 | HRGMv2_1625_3_41 | 47047 | 47829 | + | 3.A.1.103.6 |
| TC | HRGMv2_1625_3 | HRGMv2_1625_3_42 | 47839 | 49641 | + | 3.A.1.103.5 |
| pfam | HRGMv2_1625_3 | HRGMv2_1625_3_43 | 49638 | 50705 | - | LicD |
| pfam | HRGMv2_1625_3 | HRGMv2_1625_3_44 | 51193 | 54612 | + | YkuD | ChW | ChW | ChW | ChW | ChW | ChW | ChW | ChW |
| CAZyme | HRGMv2_1625_3 | HRGMv2_1625_3_45 | 54717 | 55742 | - | GT2 |
Gene ID: HRGMv2_1625_3_41
Type: TC
Location: 47047 - 47829 (+)
Type: TC
Location: 47047 - 47829 (+)
Gene ID: HRGMv2_1625_3_42
Type: TC
Location: 47839 - 49641 (+)
Type: TC
Location: 47839 - 49641 (+)
Gene ID: HRGMv2_1625_3_43
Type: pfam
Location: 49638 - 50705 (-)
Type: pfam
Location: 49638 - 50705 (-)
Gene ID: HRGMv2_1625_3_44
Type: pfam
Location: 51193 - 54612 (+)
Type: pfam
Location: 51193 - 54612 (+)
Gene ID: HRGMv2_1625_3_45
Type: CAZyme
Location: 54717 - 55742 (-)
Type: CAZyme
Location: 54717 - 55742 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Anaerotardibacter
Species
Anaerotardibacter sp900544455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1625_3_41 | vegetarian > omnivore | 1.29163 | 0.01560 |
| HRGMv2_1625_3_41 | vegetarian > vegan | 1.74047 | 0.01743 |