Cluster: HRGMv2_1615_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1615
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1615_1 | HRGMv2_1615_1_654 | 819564 | 821123 | + | 2.A.2.5.1 |
| CAZyme | HRGMv2_1615_1 | HRGMv2_1615_1_655 | 821238 | 822833 | + | GH28 |
| peptidase | HRGMv2_1615_1 | HRGMv2_1615_1_656 | 822938 | 823747 | + | S09.UPW |
| CAZyme | HRGMv2_1615_1 | HRGMv2_1615_1_657 | 823744 | 825906 | + | CE19 | CE8 |
| pfam | HRGMv2_1615_1 | HRGMv2_1615_1_658 | 825984 | 826655 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_1615_1 | HRGMv2_1615_1_659 | 826763 | 828001 | + | GH105 |
Gene ID: HRGMv2_1615_1_654
Type: TC
Location: 819564 - 821123 (+)
Type: TC
Location: 819564 - 821123 (+)
Gene ID: HRGMv2_1615_1_655
Type: CAZyme
Location: 821238 - 822833 (+)
Type: CAZyme
Location: 821238 - 822833 (+)
Gene ID: HRGMv2_1615_1_656
Type: peptidase
Location: 822938 - 823747 (+)
Type: peptidase
Location: 822938 - 823747 (+)
Gene ID: HRGMv2_1615_1_657
Type: CAZyme
Location: 823744 - 825906 (+)
Type: CAZyme
Location: 823744 - 825906 (+)
Gene ID: HRGMv2_1615_1_658
Type: pfam
Location: 825984 - 826655 (+)
Type: pfam
Location: 825984 - 826655 (+)
Gene ID: HRGMv2_1615_1_659
Type: CAZyme
Location: 826763 - 828001 (+)
Type: CAZyme
Location: 826763 - 828001 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp025992855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1615_1_659 | vegan > omnivore | 1.02076 | 0.01332 |