dbCAN HGM

Cluster: HRGMv2_1615_CGC20

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_1615_1	HRGMv2_1615_1_1769	2134732	2136108	-	GH13_20
TC	HRGMv2_1615_1	HRGMv2_1615_1_1770	2136278	2137474	-	2.A.1.2.18
TC	HRGMv2_1615_1	HRGMv2_1615_1_1771	2137596	2139956	-	9.A.8.1.6
peptidase	HRGMv2_1615_1	HRGMv2_1615_1_1772	2140427	2141326	-	S09.UPW
TC	HRGMv2_1615_1	HRGMv2_1615_1_1773	2141571	2142134	+	4.A.1.2.6
pfam	HRGMv2_1615_1	HRGMv2_1615_1_1774	2142316	2143719	+	tRNA-synt_2 \| tRNA_anti-codon
NULL(UNKNOWN)	HRGMv2_1615_1	HRGMv2_1615_1_1775	2143971	2144759	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_1615_1	HRGMv2_1615_1_1776	2144919	2145899	+	3.A.1.34.1
TC	HRGMv2_1615_1	HRGMv2_1615_1_1777	2146104	2147027	+	3.A.1.34.1
TC	HRGMv2_1615_1	HRGMv2_1615_1_1778	2147020	2147814	+	3.A.1.34.1
TC	HRGMv2_1615_1	HRGMv2_1615_1_1779	2148092	2148859	+	1.A.23.4.10

Gene ID: HRGMv2_1615_1_1769
Type: CAZyme
Location: 2134732 - 2136108 (-)

Gene ID: HRGMv2_1615_1_1770
Type: TC
Location: 2136278 - 2137474 (-)

Gene ID: HRGMv2_1615_1_1771
Type: TC
Location: 2137596 - 2139956 (-)

Gene ID: HRGMv2_1615_1_1772
Type: peptidase
Location: 2140427 - 2141326 (-)

Gene ID: HRGMv2_1615_1_1773
Type: TC
Location: 2141571 - 2142134 (+)

Gene ID: HRGMv2_1615_1_1774
Type: pfam
Location: 2142316 - 2143719 (+)

Gene ID: HRGMv2_1615_1_1775
Type:
Location: 2143971 - 2144759 (+)

Gene ID: HRGMv2_1615_1_1776
Type: TC
Location: 2144919 - 2145899 (+)

Gene ID: HRGMv2_1615_1_1777
Type: TC
Location: 2146104 - 2147027 (+)

Gene ID: HRGMv2_1615_1_1778
Type: TC
Location: 2147020 - 2147814 (+)

Gene ID: HRGMv2_1615_1_1779
Type: TC
Location: 2148092 - 2148859 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.