Cluster: HRGMv2_1615_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1615
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1615_1 | HRGMv2_1615_1_52 | 62036 | 63205 | - | CE9 |
| STP | HRGMv2_1615_1 | HRGMv2_1615_1_53 | 63322 | 64488 | - | SIS | SIS |
| TF | HRGMv2_1615_1 | HRGMv2_1615_1_54 | 64600 | 65334 | - | GntR |
| TC | HRGMv2_1615_1 | HRGMv2_1615_1_55 | 65422 | 65850 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | HRGMv2_1615_1 | HRGMv2_1615_1_56 | 65932 | 66555 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1615_1 | HRGMv2_1615_1_57 | 66744 | 67583 | - | 4.A.6.1.18 |
| TC | HRGMv2_1615_1 | HRGMv2_1615_1_58 | 67573 | 68460 | - | 4.A.6.1.18 |
| TC | HRGMv2_1615_1 | HRGMv2_1615_1_59 | 68554 | 69018 | - | 4.A.6.1.18 |
| CAZyme | HRGMv2_1615_1 | HRGMv2_1615_1_60 | 69021 | 70817 | - | GH35 |
| pfam | HRGMv2_1615_1 | HRGMv2_1615_1_61 | 71303 | 71776 | - | DUF386 |
| CAZyme | HRGMv2_1615_1 | HRGMv2_1615_1_62 | 71809 | 72978 | - | CE9 |
| TF | HRGMv2_1615_1 | HRGMv2_1615_1_63 | 73122 | 73853 | - | GntR |
| TC | HRGMv2_1615_1 | HRGMv2_1615_1_64 | 74086 | 75576 | - | 4.A.1.1.7 |
Gene ID: HRGMv2_1615_1_52
Type: CAZyme
Location: 62036 - 63205 (-)
Type: CAZyme
Location: 62036 - 63205 (-)
Gene ID: HRGMv2_1615_1_53
Type: STP
Location: 63322 - 64488 (-)
Type: STP
Location: 63322 - 64488 (-)
Gene ID: HRGMv2_1615_1_54
Type: TF
Location: 64600 - 65334 (-)
Type: TF
Location: 64600 - 65334 (-)
Gene ID: HRGMv2_1615_1_55
Type: TC
Location: 65422 - 65850 (-)
Type: TC
Location: 65422 - 65850 (-)
Gene ID: HRGMv2_1615_1_56
Type:
Location: 65932 - 66555 (-)
Type:
Location: 65932 - 66555 (-)
Gene ID: HRGMv2_1615_1_57
Type: TC
Location: 66744 - 67583 (-)
Type: TC
Location: 66744 - 67583 (-)
Gene ID: HRGMv2_1615_1_58
Type: TC
Location: 67573 - 68460 (-)
Type: TC
Location: 67573 - 68460 (-)
Gene ID: HRGMv2_1615_1_59
Type: TC
Location: 68554 - 69018 (-)
Type: TC
Location: 68554 - 69018 (-)
Gene ID: HRGMv2_1615_1_60
Type: CAZyme
Location: 69021 - 70817 (-)
Type: CAZyme
Location: 69021 - 70817 (-)
Gene ID: HRGMv2_1615_1_61
Type: pfam
Location: 71303 - 71776 (-)
Type: pfam
Location: 71303 - 71776 (-)
Gene ID: HRGMv2_1615_1_62
Type: CAZyme
Location: 71809 - 72978 (-)
Type: CAZyme
Location: 71809 - 72978 (-)
Gene ID: HRGMv2_1615_1_63
Type: TF
Location: 73122 - 73853 (-)
Type: TF
Location: 73122 - 73853 (-)
Gene ID: HRGMv2_1615_1_64
Type: TC
Location: 74086 - 75576 (-)
Type: TC
Location: 74086 - 75576 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp025992855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1615_1_57 | vegetarian > vegan | 2.42902 | 0.01560 |
| HRGMv2_1615_1_59 | vegetarian > vegan | 3.19126 | 0.01560 |
| HRGMv2_1615_1_60 | vegetarian > vegan | 2.61433 | 0.01560 |
| HRGMv2_1615_1_63 | vegetarian > vegan | 3.14049 | 0.01560 |