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Cluster: HRGMv2_1615_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1615_1 HRGMv2_1615_1_28 31628 31966 - 4.A.3.1.2
TF HRGMv2_1615_1 HRGMv2_1615_1_29 32181 33185 - LacI
TC HRGMv2_1615_1 HRGMv2_1615_1_30 33541 35316 + 4.A.3.1.1
CAZyme HRGMv2_1615_1 HRGMv2_1615_1_31 35383 36822 + GH1
TF HRGMv2_1615_1 HRGMv2_1615_1_32 37090 38127 - LacI
CAZyme HRGMv2_1615_1 HRGMv2_1615_1_33 38469 39911 + GH1
TC HRGMv2_1615_1 HRGMv2_1615_1_34 40088 41848 + 4.A.3.1.1
TF HRGMv2_1615_1 HRGMv2_1615_1_35 42186 43196 - LacI
TC HRGMv2_1615_1 HRGMv2_1615_1_36 43473 45230 + 4.A.3.1.1
CAZyme HRGMv2_1615_1 HRGMv2_1615_1_37 45306 46727 + GH1
pfam HRGMv2_1615_1 HRGMv2_1615_1_38 47095 48327 + Fic
STP HRGMv2_1615_1 HRGMv2_1615_1_39 48381 48704 - DeoRC
TC HRGMv2_1615_1 HRGMv2_1615_1_40 48867 50561 - 4.A.3.1.1
Gene ID: HRGMv2_1615_1_28
Type: TC
Location: 31628 - 31966 (-)
Gene ID: HRGMv2_1615_1_29
Type: TF
Location: 32181 - 33185 (-)
Gene ID: HRGMv2_1615_1_30
Type: TC
Location: 33541 - 35316 (+)
Gene ID: HRGMv2_1615_1_31
Type: CAZyme
Location: 35383 - 36822 (+)
Gene ID: HRGMv2_1615_1_32
Type: TF
Location: 37090 - 38127 (-)
Gene ID: HRGMv2_1615_1_33
Type: CAZyme
Location: 38469 - 39911 (+)
Gene ID: HRGMv2_1615_1_34
Type: TC
Location: 40088 - 41848 (+)
Gene ID: HRGMv2_1615_1_35
Type: TF
Location: 42186 - 43196 (-)
Gene ID: HRGMv2_1615_1_36
Type: TC
Location: 43473 - 45230 (+)
Gene ID: HRGMv2_1615_1_37
Type: CAZyme
Location: 45306 - 46727 (+)
Gene ID: HRGMv2_1615_1_38
Type: pfam
Location: 47095 - 48327 (+)
Gene ID: HRGMv2_1615_1_39
Type: STP
Location: 48381 - 48704 (-)
Gene ID: HRGMv2_1615_1_40
Type: TC
Location: 48867 - 50561 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1615_1_32 vegetarian > omnivore 1.01351 0.02003

🧭 Explore Read Mapping of CGC

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