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Cluster: HRGMv2_1613_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1613_25 HRGMv2_1613_25_4 5204 6670 - 2.A.66.2.23
pfam HRGMv2_1613_25 HRGMv2_1613_25_5 6755 7702 - ATPgrasp_TupA
pfam HRGMv2_1613_25 HRGMv2_1613_25_6 7846 8934 - EpsG
CAZyme HRGMv2_1613_25 HRGMv2_1613_25_7 8931 10034 - GT4
pfam HRGMv2_1613_25 HRGMv2_1613_25_8 10031 10978 - C5-epim_C
CAZyme HRGMv2_1613_25 HRGMv2_1613_25_9 10978 12270 - GT4
pfam HRGMv2_1613_25 HRGMv2_1613_25_10 12276 13547 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_1613_25 HRGMv2_1613_25_11 13591 14508 - GT2
TC HRGMv2_1613_25 HRGMv2_1613_25_12 14512 15276 - 9.B.18.1.2
Gene ID: HRGMv2_1613_25_4
Type: TC
Location: 5204 - 6670 (-)
Gene ID: HRGMv2_1613_25_5
Type: pfam
Location: 6755 - 7702 (-)
Gene ID: HRGMv2_1613_25_6
Type: pfam
Location: 7846 - 8934 (-)
Gene ID: HRGMv2_1613_25_7
Type: CAZyme
Location: 8931 - 10034 (-)
Gene ID: HRGMv2_1613_25_8
Type: pfam
Location: 10031 - 10978 (-)
Gene ID: HRGMv2_1613_25_9
Type: CAZyme
Location: 10978 - 12270 (-)
Gene ID: HRGMv2_1613_25_10
Type: pfam
Location: 12276 - 13547 (-)
Gene ID: HRGMv2_1613_25_11
Type: CAZyme
Location: 13591 - 14508 (-)
Gene ID: HRGMv2_1613_25_12
Type: TC
Location: 14512 - 15276 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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