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Cluster: HRGMv2_1612_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1612_10 HRGMv2_1612_10_10 10212 11537 + GH4
TC HRGMv2_1612_10 HRGMv2_1612_10_11 11620 13182 + 4.A.1.1.3
TF HRGMv2_1612_10 HRGMv2_1612_10_12 13374 14174 - HTH_6
TC HRGMv2_1612_10 HRGMv2_1612_10_13 14253 15833 - 4.A.1.1.14
CAZyme HRGMv2_1612_10 HRGMv2_1612_10_14 15858 17183 - GH4
TC HRGMv2_1612_10 HRGMv2_1612_10_15 17427 18656 - 2.A.1.2.25
NULL(UNKNOWN) HRGMv2_1612_10 HRGMv2_1612_10_16 18917 19786 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1612_10 HRGMv2_1612_10_17 19900 20793 + Aldose_epim
TC HRGMv2_1612_10 HRGMv2_1612_10_18 20900 21913 + 3.A.1.3.20
TC HRGMv2_1612_10 HRGMv2_1612_10_19 21923 23071 + 3.A.1.3.20
TC HRGMv2_1612_10 HRGMv2_1612_10_20 23094 23879 + 3.A.1.3.20
Gene ID: HRGMv2_1612_10_10
Type: CAZyme
Location: 10212 - 11537 (+)
Gene ID: HRGMv2_1612_10_11
Type: TC
Location: 11620 - 13182 (+)
Gene ID: HRGMv2_1612_10_12
Type: TF
Location: 13374 - 14174 (-)
Gene ID: HRGMv2_1612_10_13
Type: TC
Location: 14253 - 15833 (-)
Gene ID: HRGMv2_1612_10_14
Type: CAZyme
Location: 15858 - 17183 (-)
Gene ID: HRGMv2_1612_10_15
Type: TC
Location: 17427 - 18656 (-)
Gene ID: HRGMv2_1612_10_16
Type:
Location: 18917 - 19786 (+)
Gene ID: HRGMv2_1612_10_17
Type: pfam
Location: 19900 - 20793 (+)
Gene ID: HRGMv2_1612_10_18
Type: TC
Location: 20900 - 21913 (+)
Gene ID: HRGMv2_1612_10_19
Type: TC
Location: 21923 - 23071 (+)
Gene ID: HRGMv2_1612_10_20
Type: TC
Location: 23094 - 23879 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1612_10_20 vegetarian > vegan 1.07177 0.00229

🧭 Explore Read Mapping of CGC

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