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Cluster: HRGMv2_1612_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1612_5 HRGMv2_1612_5_45 52584 53510 - CE7
TC HRGMv2_1612_5 HRGMv2_1612_5_46 53642 54469 - 3.A.1.5.27
TC HRGMv2_1612_5 HRGMv2_1612_5_47 54470 56485 - 3.A.1.5.25
TC HRGMv2_1612_5 HRGMv2_1612_5_48 56489 57445 - 3.A.1.5.38
TC HRGMv2_1612_5 HRGMv2_1612_5_49 57603 59216 - 3.A.1.5.27
pfam HRGMv2_1612_5 HRGMv2_1612_5_50 59582 61522 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1612_5 HRGMv2_1612_5_51 61529 63211 - 2.A.66.4.4
pfam HRGMv2_1612_5 HRGMv2_1612_5_52 63215 63715 - tRNA_edit
pfam HRGMv2_1612_5 HRGMv2_1612_5_53 63849 66728 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_1612_5 HRGMv2_1612_5_54 66988 67818 + 3.A.1.132.3
Gene ID: HRGMv2_1612_5_45
Type: CAZyme
Location: 52584 - 53510 (-)
Gene ID: HRGMv2_1612_5_46
Type: TC
Location: 53642 - 54469 (-)
Gene ID: HRGMv2_1612_5_47
Type: TC
Location: 54470 - 56485 (-)
Gene ID: HRGMv2_1612_5_48
Type: TC
Location: 56489 - 57445 (-)
Gene ID: HRGMv2_1612_5_49
Type: TC
Location: 57603 - 59216 (-)
Gene ID: HRGMv2_1612_5_50
Type: pfam
Location: 59582 - 61522 (-)
Gene ID: HRGMv2_1612_5_51
Type: TC
Location: 61529 - 63211 (-)
Gene ID: HRGMv2_1612_5_52
Type: pfam
Location: 63215 - 63715 (-)
Gene ID: HRGMv2_1612_5_53
Type: pfam
Location: 63849 - 66728 (-)
Gene ID: HRGMv2_1612_5_54
Type: TC
Location: 66988 - 67818 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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