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Cluster: HRGMv2_1612_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1612_34 HRGMv2_1612_34_2 172 1548 - GH13_20
TC HRGMv2_1612_34 HRGMv2_1612_34_3 1702 2898 - 2.A.1.2.18
TC HRGMv2_1612_34 HRGMv2_1612_34_4 3020 5380 - 9.A.8.1.6
pfam HRGMv2_1612_34 HRGMv2_1612_34_5 5844 7076 + Zn_Ribbon_1
peptidase HRGMv2_1612_34 HRGMv2_1612_34_6 7500 8399 - S09.UPW
TC HRGMv2_1612_34 HRGMv2_1612_34_7 8646 9209 + 4.A.1.2.6
TC HRGMv2_1612_34 HRGMv2_1612_34_8 9444 11378 + 9.B.97.5.1
pfam HRGMv2_1612_34 HRGMv2_1612_34_9 11515 12918 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1612_34 HRGMv2_1612_34_10 13168 13956 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1612_34 HRGMv2_1612_34_11 14116 15096 + 3.A.1.34.1
TC HRGMv2_1612_34 HRGMv2_1612_34_12 15301 16224 + 3.A.1.34.1
TC HRGMv2_1612_34 HRGMv2_1612_34_13 16217 17011 + 3.A.1.34.1
Gene ID: HRGMv2_1612_34_2
Type: CAZyme
Location: 172 - 1548 (-)
Gene ID: HRGMv2_1612_34_3
Type: TC
Location: 1702 - 2898 (-)
Gene ID: HRGMv2_1612_34_4
Type: TC
Location: 3020 - 5380 (-)
Gene ID: HRGMv2_1612_34_5
Type: pfam
Location: 5844 - 7076 (+)
Gene ID: HRGMv2_1612_34_6
Type: peptidase
Location: 7500 - 8399 (-)
Gene ID: HRGMv2_1612_34_7
Type: TC
Location: 8646 - 9209 (+)
Gene ID: HRGMv2_1612_34_8
Type: TC
Location: 9444 - 11378 (+)
Gene ID: HRGMv2_1612_34_9
Type: pfam
Location: 11515 - 12918 (+)
Gene ID: HRGMv2_1612_34_10
Type:
Location: 13168 - 13956 (+)
Gene ID: HRGMv2_1612_34_11
Type: TC
Location: 14116 - 15096 (+)
Gene ID: HRGMv2_1612_34_12
Type: TC
Location: 15301 - 16224 (+)
Gene ID: HRGMv2_1612_34_13
Type: TC
Location: 16217 - 17011 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1612_34_5 vegetarian > vegan 16.21906 0.00229
HRGMv2_1612_34_8 vegan > omnivore 1.53313 0.00566

🧭 Explore Read Mapping of CGC

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