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Cluster: HRGMv2_1612_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1612_17 HRGMv2_1612_17_5 3553 4722 - CE9
STP HRGMv2_1612_17 HRGMv2_1612_17_6 4840 6006 - SIS | SIS
TF HRGMv2_1612_17 HRGMv2_1612_17_7 6121 6852 - GntR
TC HRGMv2_1612_17 HRGMv2_1612_17_8 7038 8120 - 4.A.6.1.4
TC HRGMv2_1612_17 HRGMv2_1612_17_9 8110 8910 - 4.A.6.1.4
TC HRGMv2_1612_17 HRGMv2_1612_17_10 9001 9483 - 4.A.6.1.4
pfam HRGMv2_1612_17 HRGMv2_1612_17_11 9520 9801 - YajC
TC HRGMv2_1612_17 HRGMv2_1612_17_12 9801 10244 - 4.A.6.1.16
Gene ID: HRGMv2_1612_17_5
Type: CAZyme
Location: 3553 - 4722 (-)
Gene ID: HRGMv2_1612_17_6
Type: STP
Location: 4840 - 6006 (-)
Gene ID: HRGMv2_1612_17_7
Type: TF
Location: 6121 - 6852 (-)
Gene ID: HRGMv2_1612_17_8
Type: TC
Location: 7038 - 8120 (-)
Gene ID: HRGMv2_1612_17_9
Type: TC
Location: 8110 - 8910 (-)
Gene ID: HRGMv2_1612_17_10
Type: TC
Location: 9001 - 9483 (-)
Gene ID: HRGMv2_1612_17_11
Type: pfam
Location: 9520 - 9801 (-)
Gene ID: HRGMv2_1612_17_12
Type: TC
Location: 9801 - 10244 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1612_17_11 vegan > omnivore 1.11253 0.00566

🧭 Explore Read Mapping of CGC

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