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Cluster: HRGMv2_1611_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1611_3 HRGMv2_1611_3_98 95583 97004 - GH1
TC HRGMv2_1611_3 HRGMv2_1611_3_99 97080 98858 - 4.A.3.1.1
TF HRGMv2_1611_3 HRGMv2_1611_3_100 99143 100144 + LacI
TC HRGMv2_1611_3 HRGMv2_1611_3_101 100478 102238 - 4.A.3.1.1
CAZyme HRGMv2_1611_3 HRGMv2_1611_3_102 102415 103857 - GH1
TF HRGMv2_1611_3 HRGMv2_1611_3_103 104199 105236 + LacI
CAZyme HRGMv2_1611_3 HRGMv2_1611_3_104 105499 106938 - GH1
TC HRGMv2_1611_3 HRGMv2_1611_3_105 107005 108780 - 4.A.3.1.1
TF HRGMv2_1611_3 HRGMv2_1611_3_106 109138 110142 + LacI
TC HRGMv2_1611_3 HRGMv2_1611_3_107 110357 110695 + 4.A.3.1.2
Gene ID: HRGMv2_1611_3_98
Type: CAZyme
Location: 95583 - 97004 (-)
Gene ID: HRGMv2_1611_3_99
Type: TC
Location: 97080 - 98858 (-)
Gene ID: HRGMv2_1611_3_100
Type: TF
Location: 99143 - 100144 (+)
Gene ID: HRGMv2_1611_3_101
Type: TC
Location: 100478 - 102238 (-)
Gene ID: HRGMv2_1611_3_102
Type: CAZyme
Location: 102415 - 103857 (-)
Gene ID: HRGMv2_1611_3_103
Type: TF
Location: 104199 - 105236 (+)
Gene ID: HRGMv2_1611_3_104
Type: CAZyme
Location: 105499 - 106938 (-)
Gene ID: HRGMv2_1611_3_105
Type: TC
Location: 107005 - 108780 (-)
Gene ID: HRGMv2_1611_3_106
Type: TF
Location: 109138 - 110142 (+)
Gene ID: HRGMv2_1611_3_107
Type: TC
Location: 110357 - 110695 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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