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Cluster: HRGMv2_1611_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1611_7 HRGMv2_1611_7_28 31053 31847 - 3.A.1.34.1
TC HRGMv2_1611_7 HRGMv2_1611_7_29 31840 32763 - 3.A.1.34.1
TC HRGMv2_1611_7 HRGMv2_1611_7_30 32968 33948 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1611_7 HRGMv2_1611_7_31 34109 34894 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1611_7 HRGMv2_1611_7_32 35153 36556 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1611_7 HRGMv2_1611_7_33 36738 37301 - 4.A.1.2.6
peptidase HRGMv2_1611_7 HRGMv2_1611_7_34 37547 38446 + S09.UPW
NULL(UNKNOWN) HRGMv2_1611_7 HRGMv2_1611_7_35 38494 38814 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1611_7 HRGMv2_1611_7_36 38936 41293 + 9.A.8.1.6
pfam HRGMv2_1611_7 HRGMv2_1611_7_37 41389 41868 + tRNA_edit
TC HRGMv2_1611_7 HRGMv2_1611_7_38 41971 43167 + 2.A.1.2.18
CAZyme HRGMv2_1611_7 HRGMv2_1611_7_39 43400 44776 + GH13_20
Gene ID: HRGMv2_1611_7_28
Type: TC
Location: 31053 - 31847 (-)
Gene ID: HRGMv2_1611_7_29
Type: TC
Location: 31840 - 32763 (-)
Gene ID: HRGMv2_1611_7_30
Type: TC
Location: 32968 - 33948 (-)
Gene ID: HRGMv2_1611_7_31
Type:
Location: 34109 - 34894 (-)
Gene ID: HRGMv2_1611_7_32
Type: pfam
Location: 35153 - 36556 (-)
Gene ID: HRGMv2_1611_7_33
Type: TC
Location: 36738 - 37301 (-)
Gene ID: HRGMv2_1611_7_34
Type: peptidase
Location: 37547 - 38446 (+)
Gene ID: HRGMv2_1611_7_35
Type:
Location: 38494 - 38814 (+)
Gene ID: HRGMv2_1611_7_36
Type: TC
Location: 38936 - 41293 (+)
Gene ID: HRGMv2_1611_7_37
Type: pfam
Location: 41389 - 41868 (+)
Gene ID: HRGMv2_1611_7_38
Type: TC
Location: 41971 - 43167 (+)
Gene ID: HRGMv2_1611_7_39
Type: CAZyme
Location: 43400 - 44776 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1611_7_28 vegetarian > vegan 1.00652 0.01355

🧭 Explore Read Mapping of CGC

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