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Cluster: HRGMv2_1610_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1610_1 HRGMv2_1610_1_198 213311 214012 - GT2
CAZyme HRGMv2_1610_1 HRGMv2_1610_1_199 214165 215217 - GT2
pfam HRGMv2_1610_1 HRGMv2_1610_1_200 215313 216149 + LicD
CAZyme HRGMv2_1610_1 HRGMv2_1610_1_201 216146 217099 - GT2
pfam HRGMv2_1610_1 HRGMv2_1610_1_202 217092 218135 - 3Beta_HSD | Epimerase | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_1610_1 HRGMv2_1610_1_203 218123 218866 - IspD | NTP_transf_3
CAZyme HRGMv2_1610_1 HRGMv2_1610_1_204 218859 219848 - GT2
CAZyme HRGMv2_1610_1 HRGMv2_1610_1_205 219867 220928 - GT2
pfam HRGMv2_1610_1 HRGMv2_1610_1_206 220981 222078 - Epimerase_2
TC HRGMv2_1610_1 HRGMv2_1610_1_207 222075 223619 - 2.A.66.1.40
Gene ID: HRGMv2_1610_1_198
Type: CAZyme
Location: 213311 - 214012 (-)
Gene ID: HRGMv2_1610_1_199
Type: CAZyme
Location: 214165 - 215217 (-)
Gene ID: HRGMv2_1610_1_200
Type: pfam
Location: 215313 - 216149 (+)
Gene ID: HRGMv2_1610_1_201
Type: CAZyme
Location: 216146 - 217099 (-)
Gene ID: HRGMv2_1610_1_202
Type: pfam
Location: 217092 - 218135 (-)
Gene ID: HRGMv2_1610_1_203
Type: pfam
Location: 218123 - 218866 (-)
Gene ID: HRGMv2_1610_1_204
Type: CAZyme
Location: 218859 - 219848 (-)
Gene ID: HRGMv2_1610_1_205
Type: CAZyme
Location: 219867 - 220928 (-)
Gene ID: HRGMv2_1610_1_206
Type: pfam
Location: 220981 - 222078 (-)
Gene ID: HRGMv2_1610_1_207
Type: TC
Location: 222075 - 223619 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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