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Cluster: HRGMv2_1610_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1610_28 HRGMv2_1610_28_5 7275 9725 - 4.A.1.1.8
TF HRGMv2_1610_28 HRGMv2_1610_28_6 9953 10672 + GntR
TC HRGMv2_1610_28 HRGMv2_1610_28_7 10979 12295 + 3.A.1.1.45
TC HRGMv2_1610_28 HRGMv2_1610_28_8 12383 13237 + 3.A.1.1.45
TC HRGMv2_1610_28 HRGMv2_1610_28_9 13237 14076 + 3.A.1.1.45
TC HRGMv2_1610_28 HRGMv2_1610_28_10 14145 15344 + 3.A.1.1.22
CAZyme HRGMv2_1610_28 HRGMv2_1610_28_11 15799 18066 - GT35
CAZyme HRGMv2_1610_28 HRGMv2_1610_28_12 18196 19701 - GH77
Gene ID: HRGMv2_1610_28_5
Type: TC
Location: 7275 - 9725 (-)
Gene ID: HRGMv2_1610_28_6
Type: TF
Location: 9953 - 10672 (+)
Gene ID: HRGMv2_1610_28_7
Type: TC
Location: 10979 - 12295 (+)
Gene ID: HRGMv2_1610_28_8
Type: TC
Location: 12383 - 13237 (+)
Gene ID: HRGMv2_1610_28_9
Type: TC
Location: 13237 - 14076 (+)
Gene ID: HRGMv2_1610_28_10
Type: TC
Location: 14145 - 15344 (+)
Gene ID: HRGMv2_1610_28_11
Type: CAZyme
Location: 15799 - 18066 (-)
Gene ID: HRGMv2_1610_28_12
Type: CAZyme
Location: 18196 - 19701 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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