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Cluster: HRGMv2_1610_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1610_24 HRGMv2_1610_24_18 20395 21321 - CE7
TC HRGMv2_1610_24 HRGMv2_1610_24_19 21453 22280 - 3.A.1.5.27
TC HRGMv2_1610_24 HRGMv2_1610_24_20 22281 24296 - 3.A.1.5.25
TC HRGMv2_1610_24 HRGMv2_1610_24_21 24300 25256 - 3.A.1.5.38
TC HRGMv2_1610_24 HRGMv2_1610_24_22 25414 27027 - 3.A.1.5.27
pfam HRGMv2_1610_24 HRGMv2_1610_24_23 27392 29332 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1610_24 HRGMv2_1610_24_24 29339 31642 - 2.A.66.4.4
Gene ID: HRGMv2_1610_24_18
Type: CAZyme
Location: 20395 - 21321 (-)
Gene ID: HRGMv2_1610_24_19
Type: TC
Location: 21453 - 22280 (-)
Gene ID: HRGMv2_1610_24_20
Type: TC
Location: 22281 - 24296 (-)
Gene ID: HRGMv2_1610_24_21
Type: TC
Location: 24300 - 25256 (-)
Gene ID: HRGMv2_1610_24_22
Type: TC
Location: 25414 - 27027 (-)
Gene ID: HRGMv2_1610_24_23
Type: pfam
Location: 27392 - 29332 (-)
Gene ID: HRGMv2_1610_24_24
Type: TC
Location: 29339 - 31642 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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