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Cluster: HRGMv2_1609_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1609_2 HRGMv2_1609_2_49 68829 70211 - GH4
TC HRGMv2_1609_2 HRGMv2_1609_2_50 70215 71009 - 4.A.1.1.16
TC HRGMv2_1609_2 HRGMv2_1609_2_51 71006 71830 - 4.A.1.1.13
pfam HRGMv2_1609_2 HRGMv2_1609_2_52 71930 72796 - PRD | PRD | CAT_RBD
TC HRGMv2_1609_2 HRGMv2_1609_2_53 72803 73315 - 4.A.1.2.5
STP HRGMv2_1609_2 HRGMv2_1609_2_54 73659 74420 - Fer4
TC HRGMv2_1609_2 HRGMv2_1609_2_55 75042 77297 - 1.I.1.1.3
STP HRGMv2_1609_2 HRGMv2_1609_2_56 77958 78920 + FHA
STP HRGMv2_1609_2 HRGMv2_1609_2_57 79092 81176 + Pkinase
TC HRGMv2_1609_2 HRGMv2_1609_2_58 81668 84010 + 3.A.3.5.15
Gene ID: HRGMv2_1609_2_49
Type: CAZyme
Location: 68829 - 70211 (-)
Gene ID: HRGMv2_1609_2_50
Type: TC
Location: 70215 - 71009 (-)
Gene ID: HRGMv2_1609_2_51
Type: TC
Location: 71006 - 71830 (-)
Gene ID: HRGMv2_1609_2_52
Type: pfam
Location: 71930 - 72796 (-)
Gene ID: HRGMv2_1609_2_53
Type: TC
Location: 72803 - 73315 (-)
Gene ID: HRGMv2_1609_2_54
Type: STP
Location: 73659 - 74420 (-)
Gene ID: HRGMv2_1609_2_55
Type: TC
Location: 75042 - 77297 (-)
Gene ID: HRGMv2_1609_2_56
Type: STP
Location: 77958 - 78920 (+)
Gene ID: HRGMv2_1609_2_57
Type: STP
Location: 79092 - 81176 (+)
Gene ID: HRGMv2_1609_2_58
Type: TC
Location: 81668 - 84010 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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