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Cluster: HRGMv2_1607_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1607_7 HRGMv2_1607_7_10 9611 10054 + 4.A.6.1.16
pfam HRGMv2_1607_7 HRGMv2_1607_7_11 10054 10335 + YajC
TC HRGMv2_1607_7 HRGMv2_1607_7_12 10372 10854 + 4.A.6.1.4
TC HRGMv2_1607_7 HRGMv2_1607_7_13 10945 11745 + 4.A.6.1.4
TC HRGMv2_1607_7 HRGMv2_1607_7_14 11735 12817 + 4.A.6.1.4
TF HRGMv2_1607_7 HRGMv2_1607_7_15 13003 13734 + GntR
STP HRGMv2_1607_7 HRGMv2_1607_7_16 13849 15015 + SIS | SIS
CAZyme HRGMv2_1607_7 HRGMv2_1607_7_17 15133 16302 + CE9
Gene ID: HRGMv2_1607_7_10
Type: TC
Location: 9611 - 10054 (+)
Gene ID: HRGMv2_1607_7_11
Type: pfam
Location: 10054 - 10335 (+)
Gene ID: HRGMv2_1607_7_12
Type: TC
Location: 10372 - 10854 (+)
Gene ID: HRGMv2_1607_7_13
Type: TC
Location: 10945 - 11745 (+)
Gene ID: HRGMv2_1607_7_14
Type: TC
Location: 11735 - 12817 (+)
Gene ID: HRGMv2_1607_7_15
Type: TF
Location: 13003 - 13734 (+)
Gene ID: HRGMv2_1607_7_16
Type: STP
Location: 13849 - 15015 (+)
Gene ID: HRGMv2_1607_7_17
Type: CAZyme
Location: 15133 - 16302 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1607_7_11 vegan > omnivore 1.01608 0.00455

🧭 Explore Read Mapping of CGC

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