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Cluster: HRGMv2_1606_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1606_2 HRGMv2_1606_2_28 35486 37162 + 3.A.1.5.35
TC HRGMv2_1606_2 HRGMv2_1606_2_29 37319 38356 + 3.A.1.5.37
TC HRGMv2_1606_2 HRGMv2_1606_2_30 38371 39306 + 3.A.1.5.11
TC HRGMv2_1606_2 HRGMv2_1606_2_31 39309 40400 + 3.A.1.5.34
TC HRGMv2_1606_2 HRGMv2_1606_2_32 40401 41429 + 3.A.1.5.36
STP HRGMv2_1606_2 HRGMv2_1606_2_33 42173 44518 + GAF | SpoIIE
STP HRGMv2_1606_2 HRGMv2_1606_2_34 44597 45343 + STAS
CAZyme HRGMv2_1606_2 HRGMv2_1606_2_35 46312 48045 + GH13_30
Gene ID: HRGMv2_1606_2_28
Type: TC
Location: 35486 - 37162 (+)
Gene ID: HRGMv2_1606_2_29
Type: TC
Location: 37319 - 38356 (+)
Gene ID: HRGMv2_1606_2_30
Type: TC
Location: 38371 - 39306 (+)
Gene ID: HRGMv2_1606_2_31
Type: TC
Location: 39309 - 40400 (+)
Gene ID: HRGMv2_1606_2_32
Type: TC
Location: 40401 - 41429 (+)
Gene ID: HRGMv2_1606_2_33
Type: STP
Location: 42173 - 44518 (+)
Gene ID: HRGMv2_1606_2_34
Type: STP
Location: 44597 - 45343 (+)
Gene ID: HRGMv2_1606_2_35
Type: CAZyme
Location: 46312 - 48045 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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