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Cluster: HRGMv2_1606_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1606_17 HRGMv2_1606_17_11 15747 17123 - GH13_20
TC HRGMv2_1606_17 HRGMv2_1606_17_12 17306 18502 - 2.A.1.2.18
TC HRGMv2_1606_17 HRGMv2_1606_17_13 18623 20983 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1606_17 HRGMv2_1606_17_14 21105 21425 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1606_17 HRGMv2_1606_17_15 21473 22372 - S09.UPW
TC HRGMv2_1606_17 HRGMv2_1606_17_16 22619 23182 + 4.A.1.2.6
pfam HRGMv2_1606_17 HRGMv2_1606_17_17 23364 24767 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1606_17 HRGMv2_1606_17_18 25017 25802 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1606_17 HRGMv2_1606_17_19 25963 26943 + 3.A.1.34.1
TC HRGMv2_1606_17 HRGMv2_1606_17_20 27133 28056 + 3.A.1.34.1
TC HRGMv2_1606_17 HRGMv2_1606_17_21 28049 28843 + 3.A.1.34.1
pfam HRGMv2_1606_17 HRGMv2_1606_17_22 29001 31028 + Metallophos | 5_nucleotid_C
TC HRGMv2_1606_17 HRGMv2_1606_17_23 31157 31924 + 1.A.23.4.10
pfam HRGMv2_1606_17 HRGMv2_1606_17_24 32018 33934 + Bmp
pfam HRGMv2_1606_17 HRGMv2_1606_17_25 33931 34641 + Metallophos | Metallophos_2
TC HRGMv2_1606_17 HRGMv2_1606_17_26 34767 35474 - 1.C.82.1.1
Gene ID: HRGMv2_1606_17_11
Type: CAZyme
Location: 15747 - 17123 (-)
Gene ID: HRGMv2_1606_17_12
Type: TC
Location: 17306 - 18502 (-)
Gene ID: HRGMv2_1606_17_13
Type: TC
Location: 18623 - 20983 (-)
Gene ID: HRGMv2_1606_17_14
Type:
Location: 21105 - 21425 (-)
Gene ID: HRGMv2_1606_17_15
Type: peptidase
Location: 21473 - 22372 (-)
Gene ID: HRGMv2_1606_17_16
Type: TC
Location: 22619 - 23182 (+)
Gene ID: HRGMv2_1606_17_17
Type: pfam
Location: 23364 - 24767 (+)
Gene ID: HRGMv2_1606_17_18
Type:
Location: 25017 - 25802 (+)
Gene ID: HRGMv2_1606_17_19
Type: TC
Location: 25963 - 26943 (+)
Gene ID: HRGMv2_1606_17_20
Type: TC
Location: 27133 - 28056 (+)
Gene ID: HRGMv2_1606_17_21
Type: TC
Location: 28049 - 28843 (+)
Gene ID: HRGMv2_1606_17_22
Type: pfam
Location: 29001 - 31028 (+)
Gene ID: HRGMv2_1606_17_23
Type: TC
Location: 31157 - 31924 (+)
Gene ID: HRGMv2_1606_17_24
Type: pfam
Location: 32018 - 33934 (+)
Gene ID: HRGMv2_1606_17_25
Type: pfam
Location: 33931 - 34641 (+)
Gene ID: HRGMv2_1606_17_26
Type: TC
Location: 34767 - 35474 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1606_17_22 vegan > omnivore 1.70123 0.01165
HRGMv2_1606_17_22 vegetarian > omnivore 1.32880 0.02695

🧭 Explore Read Mapping of CGC

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