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Cluster: HRGMv2_1605_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1605_27 HRGMv2_1605_27_10 7947 9116 - CE9
STP HRGMv2_1605_27 HRGMv2_1605_27_11 9235 10401 - SIS | SIS
TF HRGMv2_1605_27 HRGMv2_1605_27_12 10516 11247 - GntR
TC HRGMv2_1605_27 HRGMv2_1605_27_13 11432 12514 - 4.A.6.1.4
TC HRGMv2_1605_27 HRGMv2_1605_27_14 12504 13304 - 4.A.6.1.4
TC HRGMv2_1605_27 HRGMv2_1605_27_15 13395 13877 - 4.A.6.1.4
pfam HRGMv2_1605_27 HRGMv2_1605_27_16 13914 14195 - YajC
TC HRGMv2_1605_27 HRGMv2_1605_27_17 14195 14638 - 4.A.6.1.16
Gene ID: HRGMv2_1605_27_10
Type: CAZyme
Location: 7947 - 9116 (-)
Gene ID: HRGMv2_1605_27_11
Type: STP
Location: 9235 - 10401 (-)
Gene ID: HRGMv2_1605_27_12
Type: TF
Location: 10516 - 11247 (-)
Gene ID: HRGMv2_1605_27_13
Type: TC
Location: 11432 - 12514 (-)
Gene ID: HRGMv2_1605_27_14
Type: TC
Location: 12504 - 13304 (-)
Gene ID: HRGMv2_1605_27_15
Type: TC
Location: 13395 - 13877 (-)
Gene ID: HRGMv2_1605_27_16
Type: pfam
Location: 13914 - 14195 (-)
Gene ID: HRGMv2_1605_27_17
Type: TC
Location: 14195 - 14638 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1605_27_16 vegan > omnivore 1.19476 0.00863

🧭 Explore Read Mapping of CGC

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