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Cluster: HRGMv2_1605_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1605_14 HRGMv2_1605_14_1 692 2113 - 2.A.66.2.16
CAZyme HRGMv2_1605_14 HRGMv2_1605_14_2 2256 3395 - GT2
CAZyme HRGMv2_1605_14 HRGMv2_1605_14_3 3404 4156 - GT32
pfam HRGMv2_1605_14 HRGMv2_1605_14_4 4188 4853 - DUF1919
TC HRGMv2_1605_14 HRGMv2_1605_14_5 4883 5830 - 9.B.183.1.1
CAZyme HRGMv2_1605_14 HRGMv2_1605_14_6 5993 7177 - GT4
CAZyme HRGMv2_1605_14 HRGMv2_1605_14_7 7116 8180 - GT4
CAZyme HRGMv2_1605_14 HRGMv2_1605_14_8 8281 9129 - GT2
TC HRGMv2_1605_14 HRGMv2_1605_14_9 9130 9795 - 9.B.18.1.2
Gene ID: HRGMv2_1605_14_1
Type: TC
Location: 692 - 2113 (-)
Gene ID: HRGMv2_1605_14_2
Type: CAZyme
Location: 2256 - 3395 (-)
Gene ID: HRGMv2_1605_14_3
Type: CAZyme
Location: 3404 - 4156 (-)
Gene ID: HRGMv2_1605_14_4
Type: pfam
Location: 4188 - 4853 (-)
Gene ID: HRGMv2_1605_14_5
Type: TC
Location: 4883 - 5830 (-)
Gene ID: HRGMv2_1605_14_6
Type: CAZyme
Location: 5993 - 7177 (-)
Gene ID: HRGMv2_1605_14_7
Type: CAZyme
Location: 7116 - 8180 (-)
Gene ID: HRGMv2_1605_14_8
Type: CAZyme
Location: 8281 - 9129 (-)
Gene ID: HRGMv2_1605_14_9
Type: TC
Location: 9130 - 9795 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1605_14_9 vegan > omnivore 1.02100 0.00863

🧭 Explore Read Mapping of CGC

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