Cluster: HRGMv2_1604_CGC8

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1604_40	HRGMv2_1604_40_2	1004	2614	+	3.A.1.5.11
TC	HRGMv2_1604_40	HRGMv2_1604_40_3	2703	3656	+	3.A.1.5.11
TC	HRGMv2_1604_40	HRGMv2_1604_40_4	3653	4483	+	3.A.1.5.39
TC	HRGMv2_1604_40	HRGMv2_1604_40_5	4487	5482	+	3.A.1.5.35
TC	HRGMv2_1604_40	HRGMv2_1604_40_6	5472	6257	+	3.A.1.5.36
pfam	HRGMv2_1604_40	HRGMv2_1604_40_7	6334	7497	+	HGD-D
pfam	HRGMv2_1604_40	HRGMv2_1604_40_8	7602	8366	+	BcrAD_BadFG
CAZyme	HRGMv2_1604_40	HRGMv2_1604_40_9	8381	9598	+	GT4

Gene ID: HRGMv2_1604_40_2
Type: TC
Location: 1004 - 2614 (+)

Gene ID: HRGMv2_1604_40_3
Type: TC
Location: 2703 - 3656 (+)

Gene ID: HRGMv2_1604_40_4
Type: TC
Location: 3653 - 4483 (+)

Gene ID: HRGMv2_1604_40_5
Type: TC
Location: 4487 - 5482 (+)

Gene ID: HRGMv2_1604_40_6
Type: TC
Location: 5472 - 6257 (+)

Gene ID: HRGMv2_1604_40_7
Type: pfam
Location: 6334 - 7497 (+)

Gene ID: HRGMv2_1604_40_8
Type: pfam
Location: 7602 - 8366 (+)

Gene ID: HRGMv2_1604_40_9
Type: CAZyme
Location: 8381 - 9598 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1604_40_2	vegan > omnivore	3.60569	0.01416
HRGMv2_1604_40_3	vegan > omnivore	3.29504	0.01416
HRGMv2_1604_40_4	vegan > omnivore	3.54145	0.01416
HRGMv2_1604_40_6	vegan > omnivore	3.19947	0.01416
HRGMv2_1604_40_9	vegan > omnivore	1.75352	0.01416