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Cluster: HRGMv2_1603_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1603_39 HRGMv2_1603_39_1 3 836 - CE9
STP HRGMv2_1603_39 HRGMv2_1603_39_2 954 2120 - SIS | SIS
TF HRGMv2_1603_39 HRGMv2_1603_39_3 2235 2966 - GntR
TC HRGMv2_1603_39 HRGMv2_1603_39_4 3151 4233 - 4.A.6.1.4
TC HRGMv2_1603_39 HRGMv2_1603_39_5 4223 5023 - 4.A.6.1.4
TC HRGMv2_1603_39 HRGMv2_1603_39_6 5114 5596 - 4.A.6.1.4
pfam HRGMv2_1603_39 HRGMv2_1603_39_7 5633 5914 - YajC
TC HRGMv2_1603_39 HRGMv2_1603_39_8 5914 6357 - 4.A.6.1.16
Gene ID: HRGMv2_1603_39_1
Type: CAZyme
Location: 3 - 836 (-)
Gene ID: HRGMv2_1603_39_2
Type: STP
Location: 954 - 2120 (-)
Gene ID: HRGMv2_1603_39_3
Type: TF
Location: 2235 - 2966 (-)
Gene ID: HRGMv2_1603_39_4
Type: TC
Location: 3151 - 4233 (-)
Gene ID: HRGMv2_1603_39_5
Type: TC
Location: 4223 - 5023 (-)
Gene ID: HRGMv2_1603_39_6
Type: TC
Location: 5114 - 5596 (-)
Gene ID: HRGMv2_1603_39_7
Type: pfam
Location: 5633 - 5914 (-)
Gene ID: HRGMv2_1603_39_8
Type: TC
Location: 5914 - 6357 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1603_39_7 vegan > omnivore 1.04457 0.01057

🧭 Explore Read Mapping of CGC

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