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Cluster: HRGMv2_1602_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1602_17 HRGMv2_1602_17_30 27701 29395 + 4.A.3.1.1
STP HRGMv2_1602_17 HRGMv2_1602_17_31 29558 29953 + DeoRC
pfam HRGMv2_1602_17 HRGMv2_1602_17_32 30059 31291 - Fic
CAZyme HRGMv2_1602_17 HRGMv2_1602_17_33 31660 33081 - GH1
TC HRGMv2_1602_17 HRGMv2_1602_17_34 33157 34935 - 4.A.3.1.1
TF HRGMv2_1602_17 HRGMv2_1602_17_35 35220 36221 + LacI
CAZyme HRGMv2_1602_17 HRGMv2_1602_17_36 36576 38015 - GH1
TC HRGMv2_1602_17 HRGMv2_1602_17_37 38082 39857 - 4.A.3.1.1
TF HRGMv2_1602_17 HRGMv2_1602_17_38 40215 41219 + LacI
TC HRGMv2_1602_17 HRGMv2_1602_17_39 41434 41772 + 4.A.3.1.2
Gene ID: HRGMv2_1602_17_30
Type: TC
Location: 27701 - 29395 (+)
Gene ID: HRGMv2_1602_17_31
Type: STP
Location: 29558 - 29953 (+)
Gene ID: HRGMv2_1602_17_32
Type: pfam
Location: 30059 - 31291 (-)
Gene ID: HRGMv2_1602_17_33
Type: CAZyme
Location: 31660 - 33081 (-)
Gene ID: HRGMv2_1602_17_34
Type: TC
Location: 33157 - 34935 (-)
Gene ID: HRGMv2_1602_17_35
Type: TF
Location: 35220 - 36221 (+)
Gene ID: HRGMv2_1602_17_36
Type: CAZyme
Location: 36576 - 38015 (-)
Gene ID: HRGMv2_1602_17_37
Type: TC
Location: 38082 - 39857 (-)
Gene ID: HRGMv2_1602_17_38
Type: TF
Location: 40215 - 41219 (+)
Gene ID: HRGMv2_1602_17_39
Type: TC
Location: 41434 - 41772 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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