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Cluster: HRGMv2_1601_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1601_10 HRGMv2_1601_10_46 48325 50664 - 3.A.3.5.15
STP HRGMv2_1601_10 HRGMv2_1601_10_47 51158 53242 - Pkinase
STP HRGMv2_1601_10 HRGMv2_1601_10_48 53414 54376 - FHA
TC HRGMv2_1601_10 HRGMv2_1601_10_49 54976 57225 + 1.I.1.1.3
STP HRGMv2_1601_10 HRGMv2_1601_10_50 57847 58608 + Fer4
TC HRGMv2_1601_10 HRGMv2_1601_10_51 58952 59464 + 4.A.1.2.5
pfam HRGMv2_1601_10 HRGMv2_1601_10_52 59483 59941 + PRD | CAT_RBD
pfam HRGMv2_1601_10 HRGMv2_1601_10_53 59938 60336 + PRD
TC HRGMv2_1601_10 HRGMv2_1601_10_54 60436 62052 + 4.A.1.1.3
CAZyme HRGMv2_1601_10 HRGMv2_1601_10_55 62056 63438 + GH4
Gene ID: HRGMv2_1601_10_46
Type: TC
Location: 48325 - 50664 (-)
Gene ID: HRGMv2_1601_10_47
Type: STP
Location: 51158 - 53242 (-)
Gene ID: HRGMv2_1601_10_48
Type: STP
Location: 53414 - 54376 (-)
Gene ID: HRGMv2_1601_10_49
Type: TC
Location: 54976 - 57225 (+)
Gene ID: HRGMv2_1601_10_50
Type: STP
Location: 57847 - 58608 (+)
Gene ID: HRGMv2_1601_10_51
Type: TC
Location: 58952 - 59464 (+)
Gene ID: HRGMv2_1601_10_52
Type: pfam
Location: 59483 - 59941 (+)
Gene ID: HRGMv2_1601_10_53
Type: pfam
Location: 59938 - 60336 (+)
Gene ID: HRGMv2_1601_10_54
Type: TC
Location: 60436 - 62052 (+)
Gene ID: HRGMv2_1601_10_55
Type: CAZyme
Location: 62056 - 63438 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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