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Cluster: HRGMv2_1600_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1600_22 HRGMv2_1600_22_3 1941 3608 + 2.A.66.4.4
pfam HRGMv2_1600_22 HRGMv2_1600_22_4 3615 5555 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1600_22 HRGMv2_1600_22_5 5921 7534 + 3.A.1.5.27
TC HRGMv2_1600_22 HRGMv2_1600_22_6 7690 8646 + 3.A.1.5.38
TC HRGMv2_1600_22 HRGMv2_1600_22_7 8650 10665 + 3.A.1.5.25
TC HRGMv2_1600_22 HRGMv2_1600_22_8 10666 11493 + 3.A.1.5.27
CAZyme HRGMv2_1600_22 HRGMv2_1600_22_9 11625 12551 + CE7
Gene ID: HRGMv2_1600_22_3
Type: TC
Location: 1941 - 3608 (+)
Gene ID: HRGMv2_1600_22_4
Type: pfam
Location: 3615 - 5555 (+)
Gene ID: HRGMv2_1600_22_5
Type: TC
Location: 5921 - 7534 (+)
Gene ID: HRGMv2_1600_22_6
Type: TC
Location: 7690 - 8646 (+)
Gene ID: HRGMv2_1600_22_7
Type: TC
Location: 8650 - 10665 (+)
Gene ID: HRGMv2_1600_22_8
Type: TC
Location: 10666 - 11493 (+)
Gene ID: HRGMv2_1600_22_9
Type: CAZyme
Location: 11625 - 12551 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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