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Cluster: HRGMv2_1600_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1600_8 HRGMv2_1600_8_13 12532 13701 - CE9
STP HRGMv2_1600_8 HRGMv2_1600_8_14 13820 14986 - SIS | SIS
TF HRGMv2_1600_8 HRGMv2_1600_8_15 15101 15832 - GntR
TC HRGMv2_1600_8 HRGMv2_1600_8_16 16018 17100 - 4.A.6.1.4
TC HRGMv2_1600_8 HRGMv2_1600_8_17 17090 17890 - 4.A.6.1.4
TC HRGMv2_1600_8 HRGMv2_1600_8_18 17981 18463 - 4.A.6.1.4
pfam HRGMv2_1600_8 HRGMv2_1600_8_19 18500 18781 - YajC
TC HRGMv2_1600_8 HRGMv2_1600_8_20 18781 19224 - 4.A.6.1.16
Gene ID: HRGMv2_1600_8_13
Type: CAZyme
Location: 12532 - 13701 (-)
Gene ID: HRGMv2_1600_8_14
Type: STP
Location: 13820 - 14986 (-)
Gene ID: HRGMv2_1600_8_15
Type: TF
Location: 15101 - 15832 (-)
Gene ID: HRGMv2_1600_8_16
Type: TC
Location: 16018 - 17100 (-)
Gene ID: HRGMv2_1600_8_17
Type: TC
Location: 17090 - 17890 (-)
Gene ID: HRGMv2_1600_8_18
Type: TC
Location: 17981 - 18463 (-)
Gene ID: HRGMv2_1600_8_19
Type: pfam
Location: 18500 - 18781 (-)
Gene ID: HRGMv2_1600_8_20
Type: TC
Location: 18781 - 19224 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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