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Cluster: HRGMv2_1599_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1599_34 HRGMv2_1599_34_4 2628 2966 - 4.A.3.1.2
TF HRGMv2_1599_34 HRGMv2_1599_34_5 3181 4185 - LacI
TC HRGMv2_1599_34 HRGMv2_1599_34_6 4543 6318 + 4.A.3.1.1
CAZyme HRGMv2_1599_34 HRGMv2_1599_34_7 6385 7824 + GH1
TF HRGMv2_1599_34 HRGMv2_1599_34_8 8092 9129 - LacI
CAZyme HRGMv2_1599_34 HRGMv2_1599_34_9 9471 10913 + GH1
TC HRGMv2_1599_34 HRGMv2_1599_34_10 11090 12850 + 4.A.3.1.1
TF HRGMv2_1599_34 HRGMv2_1599_34_11 13264 14274 - LacI
TC HRGMv2_1599_34 HRGMv2_1599_34_12 14549 16327 + 4.A.3.1.1
CAZyme HRGMv2_1599_34 HRGMv2_1599_34_13 16404 17825 + GH1
Gene ID: HRGMv2_1599_34_4
Type: TC
Location: 2628 - 2966 (-)
Gene ID: HRGMv2_1599_34_5
Type: TF
Location: 3181 - 4185 (-)
Gene ID: HRGMv2_1599_34_6
Type: TC
Location: 4543 - 6318 (+)
Gene ID: HRGMv2_1599_34_7
Type: CAZyme
Location: 6385 - 7824 (+)
Gene ID: HRGMv2_1599_34_8
Type: TF
Location: 8092 - 9129 (-)
Gene ID: HRGMv2_1599_34_9
Type: CAZyme
Location: 9471 - 10913 (+)
Gene ID: HRGMv2_1599_34_10
Type: TC
Location: 11090 - 12850 (+)
Gene ID: HRGMv2_1599_34_11
Type: TF
Location: 13264 - 14274 (-)
Gene ID: HRGMv2_1599_34_12
Type: TC
Location: 14549 - 16327 (+)
Gene ID: HRGMv2_1599_34_13
Type: CAZyme
Location: 16404 - 17825 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1599_34_8 vegetarian > omnivore 1.01922 0.03761

🧭 Explore Read Mapping of CGC

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