Cluster: HRGMv2_1599_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1599
- CGC Family ID: CGCFAM_00019
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1599_31 | HRGMv2_1599_31_5 | 1729 | 4083 | - | 3.A.3.5.15 |
| TC | HRGMv2_1599_31 | HRGMv2_1599_31_6 | 4644 | 6878 | + | 1.I.1.1.3 |
| STP | HRGMv2_1599_31 | HRGMv2_1599_31_7 | 7496 | 8257 | + | Fer4 |
| TC | HRGMv2_1599_31 | HRGMv2_1599_31_8 | 8538 | 9050 | + | 4.A.1.2.11 |
| pfam | HRGMv2_1599_31 | HRGMv2_1599_31_9 | 9057 | 9923 | + | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1599_31 | HRGMv2_1599_31_10 | 10023 | 11639 | + | 4.A.1.1.3 |
| CAZyme | HRGMv2_1599_31 | HRGMv2_1599_31_11 | 11643 | 13025 | + | GH4 |
Gene ID: HRGMv2_1599_31_5
Type: TC
Location: 1729 - 4083 (-)
Type: TC
Location: 1729 - 4083 (-)
Gene ID: HRGMv2_1599_31_6
Type: TC
Location: 4644 - 6878 (+)
Type: TC
Location: 4644 - 6878 (+)
Gene ID: HRGMv2_1599_31_7
Type: STP
Location: 7496 - 8257 (+)
Type: STP
Location: 7496 - 8257 (+)
Gene ID: HRGMv2_1599_31_8
Type: TC
Location: 8538 - 9050 (+)
Type: TC
Location: 8538 - 9050 (+)
Gene ID: HRGMv2_1599_31_9
Type: pfam
Location: 9057 - 9923 (+)
Type: pfam
Location: 9057 - 9923 (+)
Gene ID: HRGMv2_1599_31_10
Type: TC
Location: 10023 - 11639 (+)
Type: TC
Location: 10023 - 11639 (+)
Gene ID: HRGMv2_1599_31_11
Type: CAZyme
Location: 11643 - 13025 (+)
Type: CAZyme
Location: 11643 - 13025 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958452935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.