Cluster: HRGMv2_1597_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1597
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1597_6 | HRGMv2_1597_6_78 | 78172 | 80127 | - | GH13_30 |
| STP | HRGMv2_1597_6 | HRGMv2_1597_6_79 | 80675 | 81421 | - | STAS |
| STP | HRGMv2_1597_6 | HRGMv2_1597_6_80 | 81500 | 83845 | - | GAF | SpoIIE |
| TC | HRGMv2_1597_6 | HRGMv2_1597_6_81 | 84592 | 85620 | - | 3.A.1.5.36 |
| TC | HRGMv2_1597_6 | HRGMv2_1597_6_82 | 85621 | 86712 | - | 3.A.1.5.34 |
| TC | HRGMv2_1597_6 | HRGMv2_1597_6_83 | 86715 | 87650 | - | 3.A.1.5.11 |
| TC | HRGMv2_1597_6 | HRGMv2_1597_6_84 | 87665 | 88702 | - | 3.A.1.5.37 |
| TC | HRGMv2_1597_6 | HRGMv2_1597_6_85 | 88860 | 90536 | - | 3.A.1.5.35 |
Gene ID: HRGMv2_1597_6_78
Type: CAZyme
Location: 78172 - 80127 (-)
Type: CAZyme
Location: 78172 - 80127 (-)
Gene ID: HRGMv2_1597_6_79
Type: STP
Location: 80675 - 81421 (-)
Type: STP
Location: 80675 - 81421 (-)
Gene ID: HRGMv2_1597_6_80
Type: STP
Location: 81500 - 83845 (-)
Type: STP
Location: 81500 - 83845 (-)
Gene ID: HRGMv2_1597_6_81
Type: TC
Location: 84592 - 85620 (-)
Type: TC
Location: 84592 - 85620 (-)
Gene ID: HRGMv2_1597_6_82
Type: TC
Location: 85621 - 86712 (-)
Type: TC
Location: 85621 - 86712 (-)
Gene ID: HRGMv2_1597_6_83
Type: TC
Location: 86715 - 87650 (-)
Type: TC
Location: 86715 - 87650 (-)
Gene ID: HRGMv2_1597_6_84
Type: TC
Location: 87665 - 88702 (-)
Type: TC
Location: 87665 - 88702 (-)
Gene ID: HRGMv2_1597_6_85
Type: TC
Location: 88860 - 90536 (-)
Type: TC
Location: 88860 - 90536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.