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Cluster: HRGMv2_1596_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1596_1 HRGMv2_1596_1_232 264989 266158 - CE9
STP HRGMv2_1596_1 HRGMv2_1596_1_233 266276 267442 - SIS | SIS
TF HRGMv2_1596_1 HRGMv2_1596_1_234 267557 268288 - GntR
TC HRGMv2_1596_1 HRGMv2_1596_1_235 268473 269555 - 4.A.6.1.4
TC HRGMv2_1596_1 HRGMv2_1596_1_236 269545 270345 - 4.A.6.1.4
TC HRGMv2_1596_1 HRGMv2_1596_1_237 270436 270918 - 4.A.6.1.4
pfam HRGMv2_1596_1 HRGMv2_1596_1_238 270955 271236 - YajC
TC HRGMv2_1596_1 HRGMv2_1596_1_239 271236 271679 - 4.A.6.1.16
Gene ID: HRGMv2_1596_1_232
Type: CAZyme
Location: 264989 - 266158 (-)
Gene ID: HRGMv2_1596_1_233
Type: STP
Location: 266276 - 267442 (-)
Gene ID: HRGMv2_1596_1_234
Type: TF
Location: 267557 - 268288 (-)
Gene ID: HRGMv2_1596_1_235
Type: TC
Location: 268473 - 269555 (-)
Gene ID: HRGMv2_1596_1_236
Type: TC
Location: 269545 - 270345 (-)
Gene ID: HRGMv2_1596_1_237
Type: TC
Location: 270436 - 270918 (-)
Gene ID: HRGMv2_1596_1_238
Type: pfam
Location: 270955 - 271236 (-)
Gene ID: HRGMv2_1596_1_239
Type: TC
Location: 271236 - 271679 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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