Cluster: HRGMv2_1596_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1596
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1596_1 | HRGMv2_1596_1_214 | 243104 | 243442 | - | 4.A.3.1.2 |
| TF | HRGMv2_1596_1 | HRGMv2_1596_1_215 | 243657 | 244661 | - | LacI |
| TC | HRGMv2_1596_1 | HRGMv2_1596_1_216 | 245019 | 246785 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1596_1 | HRGMv2_1596_1_217 | 246852 | 248291 | + | GH1 |
| TF | HRGMv2_1596_1 | HRGMv2_1596_1_218 | 248559 | 249596 | - | LacI |
| CAZyme | HRGMv2_1596_1 | HRGMv2_1596_1_219 | 249938 | 251380 | + | GH1 |
| TC | HRGMv2_1596_1 | HRGMv2_1596_1_220 | 251557 | 253317 | + | 4.A.3.1.1 |
| TF | HRGMv2_1596_1 | HRGMv2_1596_1_221 | 253575 | 254585 | - | LacI |
| TC | HRGMv2_1596_1 | HRGMv2_1596_1_222 | 254861 | 256645 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1596_1 | HRGMv2_1596_1_223 | 256721 | 258142 | + | GH1 |
| TF | HRGMv2_1596_1 | HRGMv2_1596_1_224 | 258339 | 259103 | - | HTH_DeoR |
| sulfatase | HRGMv2_1596_1 | HRGMv2_1596_1_225 | 259310 | 260362 | + | S1_4 |
| TC | HRGMv2_1596_1 | HRGMv2_1596_1_226 | 260689 | 261171 | - | 4.A.6.1.5 |
Gene ID: HRGMv2_1596_1_214
Type: TC
Location: 243104 - 243442 (-)
Type: TC
Location: 243104 - 243442 (-)
Gene ID: HRGMv2_1596_1_215
Type: TF
Location: 243657 - 244661 (-)
Type: TF
Location: 243657 - 244661 (-)
Gene ID: HRGMv2_1596_1_216
Type: TC
Location: 245019 - 246785 (+)
Type: TC
Location: 245019 - 246785 (+)
Gene ID: HRGMv2_1596_1_217
Type: CAZyme
Location: 246852 - 248291 (+)
Type: CAZyme
Location: 246852 - 248291 (+)
Gene ID: HRGMv2_1596_1_218
Type: TF
Location: 248559 - 249596 (-)
Type: TF
Location: 248559 - 249596 (-)
Gene ID: HRGMv2_1596_1_219
Type: CAZyme
Location: 249938 - 251380 (+)
Type: CAZyme
Location: 249938 - 251380 (+)
Gene ID: HRGMv2_1596_1_220
Type: TC
Location: 251557 - 253317 (+)
Type: TC
Location: 251557 - 253317 (+)
Gene ID: HRGMv2_1596_1_221
Type: TF
Location: 253575 - 254585 (-)
Type: TF
Location: 253575 - 254585 (-)
Gene ID: HRGMv2_1596_1_222
Type: TC
Location: 254861 - 256645 (+)
Type: TC
Location: 254861 - 256645 (+)
Gene ID: HRGMv2_1596_1_223
Type: CAZyme
Location: 256721 - 258142 (+)
Type: CAZyme
Location: 256721 - 258142 (+)
Gene ID: HRGMv2_1596_1_224
Type: TF
Location: 258339 - 259103 (-)
Type: TF
Location: 258339 - 259103 (-)
Gene ID: HRGMv2_1596_1_225
Type: sulfatase
Location: 259310 - 260362 (+)
Type: sulfatase
Location: 259310 - 260362 (+)
Gene ID: HRGMv2_1596_1_226
Type: TC
Location: 260689 - 261171 (-)
Type: TC
Location: 260689 - 261171 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905214145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.