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Cluster: HRGMv2_1596_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1596_23 HRGMv2_1596_23_12 11077 12003 - CE7
TC HRGMv2_1596_23 HRGMv2_1596_23_13 12135 12962 - 3.A.1.5.27
TC HRGMv2_1596_23 HRGMv2_1596_23_14 12963 14978 - 3.A.1.5.25
TC HRGMv2_1596_23 HRGMv2_1596_23_15 14982 15938 - 3.A.1.5.38
TC HRGMv2_1596_23 HRGMv2_1596_23_16 16096 17709 - 3.A.1.5.27
pfam HRGMv2_1596_23 HRGMv2_1596_23_17 18075 20015 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1596_23 HRGMv2_1596_23_18 20022 22325 - 2.A.66.4.4
Gene ID: HRGMv2_1596_23_12
Type: CAZyme
Location: 11077 - 12003 (-)
Gene ID: HRGMv2_1596_23_13
Type: TC
Location: 12135 - 12962 (-)
Gene ID: HRGMv2_1596_23_14
Type: TC
Location: 12963 - 14978 (-)
Gene ID: HRGMv2_1596_23_15
Type: TC
Location: 14982 - 15938 (-)
Gene ID: HRGMv2_1596_23_16
Type: TC
Location: 16096 - 17709 (-)
Gene ID: HRGMv2_1596_23_17
Type: pfam
Location: 18075 - 20015 (-)
Gene ID: HRGMv2_1596_23_18
Type: TC
Location: 20022 - 22325 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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