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Cluster: HRGMv2_1596_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1596_1 HRGMv2_1596_1_47 48211 49587 - GH13_20
TC HRGMv2_1596_1 HRGMv2_1596_1_48 49741 50937 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_1596_1 HRGMv2_1596_1_49 51113 51865 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1596_1 HRGMv2_1596_1_50 52031 53404 - GH4
TF HRGMv2_1596_1 HRGMv2_1596_1_51 53580 54332 + HTH_6
TC HRGMv2_1596_1 HRGMv2_1596_1_52 54395 56059 - 4.A.1.1.3
TC HRGMv2_1596_1 HRGMv2_1596_1_53 56374 58734 - 9.A.8.1.6
TC HRGMv2_1596_1 HRGMv2_1596_1_54 59181 60644 - 2.A.3.2.3
Gene ID: HRGMv2_1596_1_47
Type: CAZyme
Location: 48211 - 49587 (-)
Gene ID: HRGMv2_1596_1_48
Type: TC
Location: 49741 - 50937 (-)
Gene ID: HRGMv2_1596_1_49
Type:
Location: 51113 - 51865 (-)
Gene ID: HRGMv2_1596_1_50
Type: CAZyme
Location: 52031 - 53404 (-)
Gene ID: HRGMv2_1596_1_51
Type: TF
Location: 53580 - 54332 (+)
Gene ID: HRGMv2_1596_1_52
Type: TC
Location: 54395 - 56059 (-)
Gene ID: HRGMv2_1596_1_53
Type: TC
Location: 56374 - 58734 (-)
Gene ID: HRGMv2_1596_1_54
Type: TC
Location: 59181 - 60644 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1596_1_49 vegan > omnivore 1.57497 0.00229
HRGMv2_1596_1_50 vegan > omnivore 1.37595 0.00229
HRGMv2_1596_1_54 vegan > omnivore 1.35994 0.00229

🧭 Explore Read Mapping of CGC

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