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Cluster: HRGMv2_1595_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1595_17 HRGMv2_1595_17_7 5832 7253 - GH1
TC HRGMv2_1595_17 HRGMv2_1595_17_8 7329 9107 - 4.A.3.1.1
TF HRGMv2_1595_17 HRGMv2_1595_17_9 9393 10394 + LacI
TC HRGMv2_1595_17 HRGMv2_1595_17_10 10728 12488 - 4.A.3.1.1
CAZyme HRGMv2_1595_17 HRGMv2_1595_17_11 12665 14107 - GH1
TF HRGMv2_1595_17 HRGMv2_1595_17_12 14449 15486 + LacI
CAZyme HRGMv2_1595_17 HRGMv2_1595_17_13 15753 17192 - GH1
TC HRGMv2_1595_17 HRGMv2_1595_17_14 17263 19038 - 4.A.3.1.1
TF HRGMv2_1595_17 HRGMv2_1595_17_15 19396 20400 + LacI
TC HRGMv2_1595_17 HRGMv2_1595_17_16 20615 20953 + 4.A.3.1.2
Gene ID: HRGMv2_1595_17_7
Type: CAZyme
Location: 5832 - 7253 (-)
Gene ID: HRGMv2_1595_17_8
Type: TC
Location: 7329 - 9107 (-)
Gene ID: HRGMv2_1595_17_9
Type: TF
Location: 9393 - 10394 (+)
Gene ID: HRGMv2_1595_17_10
Type: TC
Location: 10728 - 12488 (-)
Gene ID: HRGMv2_1595_17_11
Type: CAZyme
Location: 12665 - 14107 (-)
Gene ID: HRGMv2_1595_17_12
Type: TF
Location: 14449 - 15486 (+)
Gene ID: HRGMv2_1595_17_13
Type: CAZyme
Location: 15753 - 17192 (-)
Gene ID: HRGMv2_1595_17_14
Type: TC
Location: 17263 - 19038 (-)
Gene ID: HRGMv2_1595_17_15
Type: TF
Location: 19396 - 20400 (+)
Gene ID: HRGMv2_1595_17_16
Type: TC
Location: 20615 - 20953 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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