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Cluster: HRGMv2_1595_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1595_12 HRGMv2_1595_12_18 18135 18578 + 4.A.6.1.16
pfam HRGMv2_1595_12 HRGMv2_1595_12_19 18578 18859 + YajC
TC HRGMv2_1595_12 HRGMv2_1595_12_20 18896 19378 + 4.A.6.1.4
TC HRGMv2_1595_12 HRGMv2_1595_12_21 19469 20269 + 4.A.6.1.4
TC HRGMv2_1595_12 HRGMv2_1595_12_22 20259 21341 + 4.A.6.1.4
TF HRGMv2_1595_12 HRGMv2_1595_12_23 21527 22258 + GntR
STP HRGMv2_1595_12 HRGMv2_1595_12_24 22373 23539 + SIS | SIS
CAZyme HRGMv2_1595_12 HRGMv2_1595_12_25 23658 24827 + CE9
Gene ID: HRGMv2_1595_12_18
Type: TC
Location: 18135 - 18578 (+)
Gene ID: HRGMv2_1595_12_19
Type: pfam
Location: 18578 - 18859 (+)
Gene ID: HRGMv2_1595_12_20
Type: TC
Location: 18896 - 19378 (+)
Gene ID: HRGMv2_1595_12_21
Type: TC
Location: 19469 - 20269 (+)
Gene ID: HRGMv2_1595_12_22
Type: TC
Location: 20259 - 21341 (+)
Gene ID: HRGMv2_1595_12_23
Type: TF
Location: 21527 - 22258 (+)
Gene ID: HRGMv2_1595_12_24
Type: STP
Location: 22373 - 23539 (+)
Gene ID: HRGMv2_1595_12_25
Type: CAZyme
Location: 23658 - 24827 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1595_12_19 vegan > omnivore 1.12952 0.00455

🧭 Explore Read Mapping of CGC

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