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Cluster: HRGMv2_1595_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1595_10 HRGMv2_1595_10_17 16615 17541 - CE7
TC HRGMv2_1595_10 HRGMv2_1595_10_18 17673 18500 - 3.A.1.5.27
TC HRGMv2_1595_10 HRGMv2_1595_10_19 18501 20516 - 3.A.1.5.25
TC HRGMv2_1595_10 HRGMv2_1595_10_20 20520 21476 - 3.A.1.5.38
TC HRGMv2_1595_10 HRGMv2_1595_10_21 21634 23247 - 3.A.1.5.27
pfam HRGMv2_1595_10 HRGMv2_1595_10_22 23613 25553 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1595_10 HRGMv2_1595_10_23 25560 27242 - 2.A.66.4.4
Gene ID: HRGMv2_1595_10_17
Type: CAZyme
Location: 16615 - 17541 (-)
Gene ID: HRGMv2_1595_10_18
Type: TC
Location: 17673 - 18500 (-)
Gene ID: HRGMv2_1595_10_19
Type: TC
Location: 18501 - 20516 (-)
Gene ID: HRGMv2_1595_10_20
Type: TC
Location: 20520 - 21476 (-)
Gene ID: HRGMv2_1595_10_21
Type: TC
Location: 21634 - 23247 (-)
Gene ID: HRGMv2_1595_10_22
Type: pfam
Location: 23613 - 25553 (-)
Gene ID: HRGMv2_1595_10_23
Type: TC
Location: 25560 - 27242 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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