Cluster: HRGMv2_1595_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1595
- CGC Family ID: CGCFAM_00428
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1595_9 | HRGMv2_1595_9_26 | 25026 | 26402 | - | 4.A.1.2.11 |
| pfam | HRGMv2_1595_9 | HRGMv2_1595_9_27 | 26406 | 27344 | - | AP_endonuc_2 |
| TC | HRGMv2_1595_9 | HRGMv2_1595_9_28 | 28025 | 30793 | + | 3.A.3.4.1 |
| sulfatase | HRGMv2_1595_9 | HRGMv2_1595_9_29 | 30933 | 31844 | - | S1_7 |
| NULL(UNKNOWN) | HRGMv2_1595_9 | HRGMv2_1595_9_30 | 31908 | 32156 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1595_9 | HRGMv2_1595_9_31 | 32194 | 33072 | - | GH140 |
Gene ID: HRGMv2_1595_9_26
Type: TC
Location: 25026 - 26402 (-)
Type: TC
Location: 25026 - 26402 (-)
Gene ID: HRGMv2_1595_9_27
Type: pfam
Location: 26406 - 27344 (-)
Type: pfam
Location: 26406 - 27344 (-)
Gene ID: HRGMv2_1595_9_28
Type: TC
Location: 28025 - 30793 (+)
Type: TC
Location: 28025 - 30793 (+)
Gene ID: HRGMv2_1595_9_29
Type: sulfatase
Location: 30933 - 31844 (-)
Type: sulfatase
Location: 30933 - 31844 (-)
Gene ID: HRGMv2_1595_9_30
Type:
Location: 31908 - 32156 (+)
Type:
Location: 31908 - 32156 (+)
Gene ID: HRGMv2_1595_9_31
Type: CAZyme
Location: 32194 - 33072 (-)
Type: CAZyme
Location: 32194 - 33072 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958446785
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.