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Cluster: HRGMv2_1594_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1594_6 HRGMv2_1594_6_17 16789 17958 - CE9
STP HRGMv2_1594_6 HRGMv2_1594_6_18 18078 19244 - SIS | SIS
TF HRGMv2_1594_6 HRGMv2_1594_6_19 19359 20090 - GntR
TC HRGMv2_1594_6 HRGMv2_1594_6_20 20276 21358 - 4.A.6.1.4
TC HRGMv2_1594_6 HRGMv2_1594_6_21 21348 22148 - 4.A.6.1.4
TC HRGMv2_1594_6 HRGMv2_1594_6_22 22239 22721 - 4.A.6.1.4
pfam HRGMv2_1594_6 HRGMv2_1594_6_23 22758 23039 - YajC
TC HRGMv2_1594_6 HRGMv2_1594_6_24 23039 23482 - 4.A.6.1.16
Gene ID: HRGMv2_1594_6_17
Type: CAZyme
Location: 16789 - 17958 (-)
Gene ID: HRGMv2_1594_6_18
Type: STP
Location: 18078 - 19244 (-)
Gene ID: HRGMv2_1594_6_19
Type: TF
Location: 19359 - 20090 (-)
Gene ID: HRGMv2_1594_6_20
Type: TC
Location: 20276 - 21358 (-)
Gene ID: HRGMv2_1594_6_21
Type: TC
Location: 21348 - 22148 (-)
Gene ID: HRGMv2_1594_6_22
Type: TC
Location: 22239 - 22721 (-)
Gene ID: HRGMv2_1594_6_23
Type: pfam
Location: 22758 - 23039 (-)
Gene ID: HRGMv2_1594_6_24
Type: TC
Location: 23039 - 23482 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1594_6_23 vegan > omnivore 1.12522 0.00701

🧭 Explore Read Mapping of CGC

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