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Cluster: HRGMv2_1593_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1593_11 HRGMv2_1593_11_19 21592 22518 - CE7
TC HRGMv2_1593_11 HRGMv2_1593_11_20 22650 23477 - 3.A.1.5.27
TC HRGMv2_1593_11 HRGMv2_1593_11_21 23478 25493 - 3.A.1.5.25
TC HRGMv2_1593_11 HRGMv2_1593_11_22 25497 26453 - 3.A.1.5.38
TC HRGMv2_1593_11 HRGMv2_1593_11_23 26609 28222 - 3.A.1.5.27
pfam HRGMv2_1593_11 HRGMv2_1593_11_24 28588 30528 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1593_11 HRGMv2_1593_11_25 30535 32217 - 2.A.66.4.4
Gene ID: HRGMv2_1593_11_19
Type: CAZyme
Location: 21592 - 22518 (-)
Gene ID: HRGMv2_1593_11_20
Type: TC
Location: 22650 - 23477 (-)
Gene ID: HRGMv2_1593_11_21
Type: TC
Location: 23478 - 25493 (-)
Gene ID: HRGMv2_1593_11_22
Type: TC
Location: 25497 - 26453 (-)
Gene ID: HRGMv2_1593_11_23
Type: TC
Location: 26609 - 28222 (-)
Gene ID: HRGMv2_1593_11_24
Type: pfam
Location: 28588 - 30528 (-)
Gene ID: HRGMv2_1593_11_25
Type: TC
Location: 30535 - 32217 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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