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Cluster: HRGMv2_1593_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1593_7 HRGMv2_1593_7_10 9688 11064 - GH13_20
TC HRGMv2_1593_7 HRGMv2_1593_7_11 11218 12414 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_1593_7 HRGMv2_1593_7_12 12590 13342 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1593_7 HRGMv2_1593_7_13 13508 14881 - GH4
TF HRGMv2_1593_7 HRGMv2_1593_7_14 15057 15809 + HTH_6
TC HRGMv2_1593_7 HRGMv2_1593_7_15 15872 17536 - 4.A.1.1.3
TC HRGMv2_1593_7 HRGMv2_1593_7_16 17851 20211 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1593_7 HRGMv2_1593_7_17 20333 20653 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1593_7 HRGMv2_1593_7_18 21117 22580 - 2.A.3.2.3
Gene ID: HRGMv2_1593_7_10
Type: CAZyme
Location: 9688 - 11064 (-)
Gene ID: HRGMv2_1593_7_11
Type: TC
Location: 11218 - 12414 (-)
Gene ID: HRGMv2_1593_7_12
Type:
Location: 12590 - 13342 (-)
Gene ID: HRGMv2_1593_7_13
Type: CAZyme
Location: 13508 - 14881 (-)
Gene ID: HRGMv2_1593_7_14
Type: TF
Location: 15057 - 15809 (+)
Gene ID: HRGMv2_1593_7_15
Type: TC
Location: 15872 - 17536 (-)
Gene ID: HRGMv2_1593_7_16
Type: TC
Location: 17851 - 20211 (-)
Gene ID: HRGMv2_1593_7_17
Type:
Location: 20333 - 20653 (-)
Gene ID: HRGMv2_1593_7_18
Type: TC
Location: 21117 - 22580 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1593_7_12 vegan > omnivore 1.65579 0.00566
HRGMv2_1593_7_13 vegan > omnivore 1.40202 0.00566
HRGMv2_1593_7_18 vegan > omnivore 1.52068 0.00566

🧭 Explore Read Mapping of CGC

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