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Cluster: HRGMv2_1593_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1593_38 HRGMv2_1593_38_8 6450 7619 - CE9
STP HRGMv2_1593_38 HRGMv2_1593_38_9 7737 8903 - SIS | SIS
TF HRGMv2_1593_38 HRGMv2_1593_38_10 9018 9749 - GntR
TC HRGMv2_1593_38 HRGMv2_1593_38_11 9934 11016 - 4.A.6.1.4
TC HRGMv2_1593_38 HRGMv2_1593_38_12 11006 11806 - 4.A.6.1.4
TC HRGMv2_1593_38 HRGMv2_1593_38_13 11897 12379 - 4.A.6.1.4
pfam HRGMv2_1593_38 HRGMv2_1593_38_14 12416 12697 - YajC
TC HRGMv2_1593_38 HRGMv2_1593_38_15 12697 13140 - 4.A.6.1.16
Gene ID: HRGMv2_1593_38_8
Type: CAZyme
Location: 6450 - 7619 (-)
Gene ID: HRGMv2_1593_38_9
Type: STP
Location: 7737 - 8903 (-)
Gene ID: HRGMv2_1593_38_10
Type: TF
Location: 9018 - 9749 (-)
Gene ID: HRGMv2_1593_38_11
Type: TC
Location: 9934 - 11016 (-)
Gene ID: HRGMv2_1593_38_12
Type: TC
Location: 11006 - 11806 (-)
Gene ID: HRGMv2_1593_38_13
Type: TC
Location: 11897 - 12379 (-)
Gene ID: HRGMv2_1593_38_14
Type: pfam
Location: 12416 - 12697 (-)
Gene ID: HRGMv2_1593_38_15
Type: TC
Location: 12697 - 13140 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1593_38_14 vegan > omnivore 1.09238 0.00566

🧭 Explore Read Mapping of CGC

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